RNA id: TCONS_00044519


Basic Information

Item Value
RNA id TCONS_00044519
length 7446
RNA type mRNA
GC content 0.40
exon number 13
gene id XLOC_022590
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 40185381 ~ 40194732 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAATCAATCTAATGAATTTTTCTTTTTACCCAGCATGCCTTTCTCATGCAGCCCATACAACAACAACCTCTGTGGCCGTTTCACACCCATCAAACTGATGGCCGACGACTGCAGGAGGGGAGCATGCTATTCACCATATGCCAACTCTTGGTATAACCCATGTGCAAGTTCTTGTGGCAAGATTAACCGTTGTGCCACTCCTTGCGCAGATCCTTGCGGTTACCCCTATGGTTACTCCTATGGTTACCCCTATGGTTCTAACTGTGGTTACAACTATGGCTACCCCTATGGTTACAACTGTGGCTACAACTACGGCTACCCATATGCTAACCGTTGTGTTAACCCATGCACCACCACCACCCCGTATGTTAAATCATGCGTTAACCCTTGTCTTGACACCTGCGTTAACCCATGCGTTAACCCTTGTGCCACTCCATGCTCTACCTACTCTTACCGGGATTATGAGTCTAGGCAAGTTGTTACGAGAGAGTGCATTGATGACTGCACAACCAAGCGAGTCTGTGCAACTGACGAAGCTCTTCTCCGTGTGAGCAAGGTTGACCTTCTGTCATGCAGGACTGGACCTAATCGTATGGAGCACCGCACGCACTTCTTCCACGAAGAGAAACTCATCGTCCGTAGAGGACAGTGTTTCAATATGTGGATTGATCTGTGCCGTCCTTTCAATCCCACCTGTGACAAACTTCACCTTGAGCTCAGACTTGGCCACATCCCATCAATCCGTGACGGCACATACGTGATCGTCCCGATTGTGGATGAATTCAAGAAAGACTGCTGGGGTGCAAGGATTGTCGAAAGGTGCCAGAACCGACTCAAACTGTGTGTGAACTCTCTCCCAACCTCTTGTGTTGGACGTTACCAGCTCAGCGTTGTGACGCACTGTTCAGCAGGAAGATTCTGCTTGCCATACGTGCCTGAAAATGACATTTACATGCTGTTCAACCCCTGGTGCAAAGAGGACTGTGTGTACCTGCATGAGGAGACCGAGAGAGCCGAGTACGTGCTGAATGATATTGGTAAAATCTACTATGGAACCAAGCACCAGATTGGTTGCAAATCATGGAACTTTGGTCAATTTGAGGAGGGAATCCTGCCCGCGTGTTTCTATGTGTTGGAGAAGAGTTGTGCCCCTTGCTCAGGATGGGGAAACCCCATTAACATCTCCAGAGTGGTGTCTGACATGGTCATTGCCAAAAAAGACTGTGGTGTGTTGATGGGCAACTGGTCAAACTGCTATACCGATGGAATCGCTCCAACATCCTGGTGCGGAAGCAGTGCCATCTTGAGACAGTACTACAAATGTGGAGGAGCACCTGTCAGATATGGGCAGAGCTTGGCCTTTGCTGGAGTCACCAACACAATGTTGAGGTGTTTGGGTATTCCAACTCGTCCAGTCTCAAACTTCTGCTCTGCTCACGACACTGACATGTGCTTGACATCCGACGTCTATCTGGATGAGAAGTTTCAGCTGATTGATCACATGAATGCCAATCCAATCTGGAACTACCATGTGTGGAATGAGGCCTGGATGACCCGTCCAGATCTGCCCACTGGTTTTGGAGGTTGGCAGGCTATTGACTCCACTCCTCAGCTGACCCACCAGGGCTTCTTCCGCTGTGGTCCAACCTCAGTCGCTGCAATCCGCAGCGGGCAGACCTTCCTGAAGCACGACGTGCCCTTCCTCTTTGCAGAAGTGAACAATGATAAGGTGTACTGGCAGCGCAAGTGTGATGGTACATTCGGTGTTGTCCATGTTGAGAAGGATGTAGTCGGTCACTGCATCAGCACCAAGGCTGTCGGATCAGATCAACGTCTTGACATTACAAACCTCTACAAACACCCATGTGGTTCTGAGGATAGGTGCACTGCTCTGGAAACCGCTCTTCGCCATGGATGTAGGAGAATCAATTACCCTCTGCCCTGCGCTGAAGATGTCGTCTGTGAAGTCAACCTGAAGGGAGACGGACCATGTGTCGGCAGGGATGCCGTGGTTTGCATCAACCTAAGAAACAAATGCAACCAGCCTCGTAGCGTCACCCTCTACAGCCATGCCGCAGCCATGTACTACACCGGAGTCAGAAGGACCTACCTGAAGAGAGACCAGACATGCATTGAGCTCAAGCCCTCTGAATGCAAACCTCTGGAATGGACCCTGAGCTATGATGAGTATAAGGAGCACCTGGTGGATCACGCTCCACTGATGCTCAACCTCTTCGGACACGTGGCTCAAACCAAGCAGATTCTGGCCACCCAGTACAACTTCAGACTGCGCACTCCTGACCTGGTTCTCGCTCCTGCATGTGATGCTGTTGTGGGCCAAGAAGTGGCCGTCAAAGTCACCTTCCAGAACCCACTGTCTTGCGTCCTGAGGAACGCTGCTTTCCGCTTTGTGGGACTCGGACTGCAACATCCTAGAATTATCAACTATGGTGATATCGCCGGACATGCCACTGTTTCCCTGACTGAGAAATTCATCCCCATGTGTCACGGCCCACAGAAACTGCTGGCATCATTCGACTGTCCTCAGCTCACTCAGGTGCACGGATTCACCAACATGGTTGTCAAACAGCACTGAAAACCCCATCGATTAACCAAACGACAAGGCTCCACGGAATAGAAAGCGCTTCCCCCTAAACCGATCTGCAGAATTAAAACGCATCTGTTAGTTTCACTTCAACCTGTAAAGCTTCTCACAGCACATTCAATCATGATTTAAGACAATCGTGATGATGCTTTAATAGCGCAGTTGTCTTCCATTATGATTAAACGCCATTGATTTTCCAAACTTTGACCTTAGAGATTTACAAATGTTATACTCAATAATCATTAATCAAGTTCTGTTAATTCTTTGTTTTCATAATCATTGTTTCATGGTGATGGTTATTCTGTCCTGTGTAGCCTCAGCTTCAATAAAAACACTTCCAAGCATACTAAACGGTCTCTTCATGATGTGTAATTGAACATGACTTACTAAAAGGAGGCTTTACTCCCTCTTGTCATTTAAAATTAGCAATACATTTCAGGATTTTATACGCACATTATTCCAGCTGGGTTTCTAAAACTTCAGATGTATTAAAAGataatataaaacacatttcaaGTCAACGAGATAAAGAAAAAACGCAAGAGAGAGTATACTAggtttagtgtttaaaatatatatatgtatataaaaagggTCCAGTAAAAGCTGATTAAATCCATCCAGTTATCCAGGTGAGGGACACACGTTCAGTGCATTGCTCTGAATCCCTGAGAAGAGACTGTGGGGTTTGGGTCTGATTCAGAATCAGCATCTATTGAGCACAAACAAATGTGAATAAAGCAATGATTGAAAGTCTTCATTTATCTTCTCCTACCAAAATCTTCAAGTCCAAAATGAGAAGAGAAAAAATCTTCCAGGATCAACGATTCAGGAGGAAAACTTCAGTAAGGACTGCAAAATACAAAGTTTTTCTTCCTCAGTGTTTTTATCCTGTACAGATGTCATATTTTACTTCTACTTTATATCACAATGCTGAGTAAACAAGTTGTAAAATCCAAATAGCAAGAAATTGAGCCAAATTTAAAGTTGTTAAATTGGAATTTTGAGACGGGAAAAGCCTGAATATTGAGATGTATAtgcaaacattatttaaaaaaaattagatttgCGAGATACAAATTGTGAGATGCGTTGATGAATTGAGTTGTGAGAAAGTCAAAACCTAAGATATTACAACATGGAAgactaaattatatttataaatactatagtatactACTTAATTATAATTTCGTCTTCCATGTCGTAGTATCTTAGGCAGGGGTGTCtgaactcagtcctggagggccggtgtcctgcatagtagAGCTCCAGCTTCCTTCAATACACCTCCCAGGAAGTTTCtggtatacctagaaagagcttgattagctggttcaggtgtgtttaattgaggGTGGACCTAAAAAgggcaggacaccggccctccaggactgagtttggacatcctggttaagtattttttgtaattatattttcaTCTTCCATGTTGTAGTATCTTAGGTTGCGACTTTACATCTCACAACTCATAAAGTCATCAATGAATTTTACAAATTTCATCATTTATATCTCACAAAtcgaaatcattaaaaaaattctatttagAGAAGAGACGTTAAGTATATagtctatatcaggggtgtctGAACTCAGTCcaggaggaccggtgtcctgcatagtttagctccagcttcctTCAatacacctccctggaagtttctggtatatctagaaagagcttgattagctggttcaggtgtgtttaattgaggGTGGACCTAAAaggtgcaggacactggccctccaggactgagtttggacaccctggtattgtatttttaataaatatattttcatctTCCATGTTGTAATATTTTAGGTTTCGACTTTACATTTCACAAATCTCATCATTTATATCTCGCAAATcgaaatcattttaaagttctaTTTGGAGAAGAGACGTTTAGTGTATATagtctatatcaggggtgtccaaacccagTCATTGAGGGCCACATTTTTATTagagctccaacttccttcaacacacctccttaGAAATTTCTAGtaaacctagtaagagcttgattagctggttcgggTGTTTTTAATTGAGGTTGGACCCAAAaggtgcaggacactggccctccaggactgagtttggacaccctggtaaagtattttttgtaattataatttCATCTTCCATGTTGTAGTATCTTAGGTTGCGACTTTACATCTCACAGCTCATAAATTCATCAATGCATTTTACAAATTTCATCATTGATATCTCACAaatcaaaatcatttttaaaattctatttAGAGAAGAGACGTTTAGTGTATATAGTCTAtatcagggatgtccaaactcagtcctggagggccggtgtcctgcatagtagAGCTCCAGCTTCCTTCAatacacctccctggaagtttctagtatatctagaaagagcttgattagctggttcaggtgtgtttaattgaggtTGGACCCAAAaggtgcaggacactggccctccaggactgagtttggacatcctggtaaagtattttttgtaattataatttCATCTTCCATGTTGTAGAATCTTAGGTTGCGACTTTACATTTCACAACTCATAAAGTCATCAATGAATTTTACAAATTTCATCATTTATATCTCACAAAtcgaaataattttttaaaattctatttaGAGAAGAGACGTTAAGTATATagtctatatcaggggtgtctgaactcagtccaggagggccggtgtcctgcatagttgaGCTCCAGCTTCCTTAAatacacctccctggaagtttctggtatatctagaaagagcttgattagttggttcaggtgtgtttaaatgaGGGTGGACCTAAAaggtgcaggacaccggccctccaggactgagtttggacaaccTGGTATAGTATTTTTAGTAATTATAATTTCATCTTCCATGTCATAGTATCTTAGGTTTCgactttacatctcacaatttaTTAACACATCTAACAAATCTCATGATTTATATCTCGCAAATCgaaatcattttaaatttctATGTAGAGAAGAGACGTTTAGTGTATATagtctatatcaggggtgtccaaacttagtcctggagggccggtgtcctgcactgTTCAGCTTCAGCTTTCTTTAACACACCTACCTGAAAATTTCtggtatacctagaaagagcttgattagctgtttaacaaataaatctaattcataatagagttggaactaaaatatgcaggagaccagccttccaggactgagtttggacactcctgattTAGATCAAACACTCACCAAGAAAATGCAGTGCATGATTAATATCTTAAaataataccaaaaaaaaaatcttaattgttggatattaagtcagaattgtggtATAAAgtctgaataaaaaatatttattttcccccctaaaataagaaaaaaggggaaataaaaacaatttgaaGTTAATAGAAACTAATAGAGGTTAAGATTTTGATTTGATGAAGATTTGATATCATAAGAAAAACTTTGCTTCAAGTAAACATCTTCATTTAGATAAAACACTGACACTGAGAAAACTGAGTGCAGTGCAGCGATTAATATCTTTATATCTAACACTGATTTATTTGGTATtattttaagtcagaattgtgtCATATAAGgtctaaattaaaactaaatggcAAGAAAGTCAGAAATgtgaaaacaaaccaaaaatgcaactatcatttatttttttcctcctaAAATAGGAAAAAATATGGAATAAAATTGCTGATAGAATTTAGATTTGATAAAGATTTGATATCATTACAAAAACTTGTCATTTGTATCAAACACTGACCAAGAAAATTTAGTGCAGCACGATTAATATCTTAATATCAAACAATTCTGaatttattgctattattttacGTTAGAATTGCTATGTAAAGTCtgaattttatgaaaaaaaaactaaatggcagaaaataaactcagaattgtgaaaATATTAACCAGATTATCATAATCATTTAACTGTTTAAATATCTAAACACTTACTATTTATGCTTAAAATTAGGAAACAAATGTCGAATAAGGAAACTATAAGCATAAAGATTTGATATAAAATTTGTAGCTTCAAGTAAACATCTTCATGTAGATCAAACACTGAGGAAGAAAATATAGTGCAGTACATGATTAATATCTTCAAATaataccaaaaaacaaacaaacatcagttTTGGTAAAGGAGCCGGTCAGTCAGGGTTTGTGTGAACAGGTCTGGAGTCTGTCGGTAAAATGACCCTCTGCTCATCGATGCGTTTGGCCTGCGAGCGAAGGATGAGGCTGAAGAAGTCTTCATCTGGGACTGTAGGACCTCTggttggaggaggaggaggagcacaTCTCTGATCATCCAGCCTGGATCCCTGAACAGTCAGAAACAAACAATTTCACAACACACACTTTTAAATGCTAAGGGTTTCGCTATTATGGTGAAAACTTTTACGTTTTTTTAGTGTAGGCTTGTACTTTACAGCACTTTAAAAATGTCTGTCaaagttttcaaacaattatatttgtaagagccagttatgcataattcatttgtgataataattttgttaaaggttaaaacatgataaaaattgatatttaaatataataagaattcattgtgattgtgttatctaaaatgcataatttaataattaatataatttaaaaacagttACTTTGGTATTTTGGCCTCCAACAGTAATACGTCATGAGGTCATTAGTTCATACGTTTAAGTCAGATTGCAGTTATGGATGTTGGAAGCAACACAGTTTTTTGACCGAGCTGATCGAGTCTATGGTAACTTcgtatttttg

Function

GO:

id name namespace
GO:0018149 peptide cross-linking biological_process
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110408-37 Predicted to enable protein-glutamine gamma-glutamyltransferase activity. Predicted to be involved in peptide cross-linking. Human ortholog(s) of this gene implicated in autosomal recessive congenital ichthyosis 1. Orthologous to human TGM1 (transglutaminase 1).

Ensembl:

ensembl_id ENSDART00000164931

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045106 lncRNA downstream 243265 39940240 ~ 39942116 (-) True XLOC_022586
TCONS_00045105 lncRNA downstream 650487 39527970 ~ 39534894 (-) True XLOC_022579
TCONS_00045104 lncRNA downstream 650558 39527970 ~ 39534823 (-) False XLOC_022579
TCONS_00045103 lncRNA downstream 650652 39527970 ~ 39534729 (-) False XLOC_022579
TCONS_00045107 lncRNA upstream 81426 40276158 ~ 40286032 (-) False XLOC_022592
TCONS_00045109 lncRNA upstream 81426 40276158 ~ 40296806 (-) False XLOC_022592
TCONS_00045108 lncRNA upstream 81426 40276158 ~ 40296806 (-) False XLOC_022592
TCONS_00045110 lncRNA upstream 88391 40283123 ~ 40286011 (-) False XLOC_022592
TCONS_00045111 lncRNA upstream 88391 40283123 ~ 40296513 (-) False XLOC_022592
TCONS_00044518 mRNA downstream 225597 39958223 ~ 39959784 (-) True XLOC_022589
TCONS_00044517 mRNA downstream 226208 39958166 ~ 39959173 (-) False XLOC_022589
TCONS_00044514 mRNA downstream 336226 39807857 ~ 39849155 (-) True XLOC_022585
TCONS_00044513 mRNA downstream 401013 39774931 ~ 39784368 (-) True XLOC_022584
TCONS_00044511 mRNA downstream 413274 39755641 ~ 39772107 (-) False XLOC_022583
TCONS_00044520 mRNA upstream 39870 40234602 ~ 40250886 (-) True XLOC_022591
TCONS_00044521 mRNA upstream 62501 40257233 ~ 40295610 (-) False XLOC_022592
TCONS_00044523 mRNA upstream 331253 40525985 ~ 40536089 (-) False XLOC_022595
TCONS_00044524 mRNA upstream 332161 40526893 ~ 40536017 (-) False XLOC_022595
TCONS_00044526 mRNA upstream 334480 40529212 ~ 40536040 (-) True XLOC_022595
TCONS_00044516 other downstream 232975 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044515 other downstream 239803 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044508 other downstream 518923 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044502 other downstream 2025637 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044500 other downstream 2057812 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044525 other upstream 333929 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044527 other upstream 398085 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044540 other upstream 1092601 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044542 other upstream 1151012 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044546 other upstream 1559758 41754490 ~ 41762926 (-) True XLOC_022615

Expression Profile

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