RNA id: TCONS_00044520


Basic Information

Item Value
RNA id TCONS_00044520
length 2459
RNA type mRNA
GC content 0.48
exon number 11
gene id XLOC_022591
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 40234602 ~ 40250886 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgagagtgtatggatgtttcccagtgctgggttgcagctgaaagggcatccgctgcattaaacaaatgctggaatagttggtggtttattccactgtggtgacccctgataaataagggactaagccgaaggaaaacgaatgaatgaatgatgggcTATTTAATAATTACTATTGTTATACCTtctttttgcatttatttctcAGGCAATGTTCCATCAATACCCAACGGCACACTGGTGATTGTTCCACTTGTGGAAGAATTCAAGAAAAATCGCTGGGAGGCCAAGATTGTTGAAAAGTGCCAAAACCGAATCAAACTCAGCGTGTACTCGCTTCCCACCGCGTGCATCGGACGCTACAGCCTGACCATTGTGACCTGCGGCCCGAAGGGAAGAGCCACCTCATCATGCAACCCCAGCAATGATATTTACATGCTGTTTAACCCCTGGTGCAAAGATGATGCTGTGTATCTGGATGAAGATGCCCAGAGGACTGAGTATGTGCTGAATGACACAGGCAAAATCTTCTATGGAACTAAACATCAGATCGCTTCCAGAACATGGCACTTTGGTCAATTTGACGAAGGAGTCCTGGCTGCGTGTTTGTTTGTGCTGGAGAAGTGTGGTGGAGCATGCAGTGGATGGGGAGACCCTGTTAACGTGGCCAGAGTTGTGTCTGCCATGGTTAATGCCAATGATGACTCTGGTGTGTTGATGGGCAACTGGTCGAACTGCTATGCGGACGGGACTGCTCCAACAGCCTGGTGTGGCAGCAGTGCCATCTTGAAGCAATACCACAAATGTGGAGGAGTACCTGTCAAATATGGACAGAGCTTGGCCTTTGCTGGAGTCACCAACACACTGTTGAGGTGTTTTGGTATTCCTGCTCGGCCGGTCACCAACTTCTGCTCTGCTCACGACACTGATGTGTCCATGACTGTAGACATTTATCTTGACGAGAACTATGACCTGATCGACAGCCTGAACCGGGACTCAATCTGGACCTTCCATGTGTGGAATGAGGCCTGGATGGCTCGTTCAGATCTGCCTGCAGGTTTTGGAGGTTGGCAGGCCATTGATGCGACTCCTCAGGAAACCAGTCAGGGTGTTTTCCGCTGTGGTCCGACCTCTGTTGCTGCCATCCGCAGCGGGCAGGTCTTCCTCAAATATGATGCACCTTTCATTTTTGCTGAGGTGAACAGTGATGTAGTTTTCTGGCAGAGGAAAGCATGTGGGACGTTCGCTGTGGTCCACGTTGACAAGAATGCAGTCGGTCACTGCATCAGCACCAAGGCTGTGGGCTCAGACAAACGTGTGGACATTACCAACCACTACAAGCACCCAGAAGGTTCAGAGGAGGAGCGTCGTGCTGTGGAAACTGCTCTTCGTCATGGCTCCAAAAAGTGCGCATATCCTCTGCCCTGCGCCGAGGATGTCATCTGTGACATCACTATGAAGGGTGATGGAGTGTGTGTGGGCAAGGATGCAGTGCTTTGCATCGCTCTGAAGAATAAATGCAGCTCAACTCGTAGCGTCACCCTCCACAGCCAGCTGTCGGCTGCTTACTACACCGGCATCCACAAGTCCTTGGTGAAGAAGGACCAGACATGCTTCGAGCTCAAGGCTACTGAAACCAAGGTTCTGGAGTGGTCTCTGAAATATGAGGATTACAAGAACCACCTTGTGGATCATTCAACGATGATGGTCACTGTTGCCGGACGCGTCACTCAGACTCAGCAGATTGTGGCCAAACGGTTCAACTTTCGACTGCCCACACCCGGCCTTGCTATTTCTCCTGGATGCGATTGTGTTGTGGGCAAAGAAGTGCCAGTCAAAATCACTTTCCAAAACCCACTGCCCTGCGTGCTGAAAAACGCCATCTTCCGCATTGAGGGACTGGGTCTGAAGCACTGCAGATCCATCAACTATGGTGATATTGCAGGCCTGGCCACTGTGAACCTGACCGAGAAGTTCATTCCCAAATGTCACGGCCCTCACAAGCTTCTGGCATCTCTGGATTGTCCTCAGCTCACTCAGGTGCATGGATTCACCGACGTCGTTGTCAAAGAAAAGTGAACAAGCGGCTGAATTGATAATTCAGCAAGCTTTTCATGCTGATCGACTGGCAGAGTTAAAAGCTTTTAGTTAAATGTAATCAATAGCAAACGCTGAAGCAAAGGGTGCATTTTCATTAGGGAGCTTGCTTTTAGATGTTGCTGTTTGTGGAAGTATTGTTGTAGAATATGTGATATTTGTAGtttcacatatttttaaaaagatctgACATATATAAAACTATTAACCACATCAACTACTTCCTTTCATGCAGTCAACCTAaccaaatttcattcattttagttGCATGAATTATCTGTCCACCAAATTGCCTCAATAAACGACATTCGCTTGCAATACTTGTGCATTTGTAATGTGTCTTTTTGAGTTTGTTGATGAAATG

Function

GO:

id name namespace
GO:0018149 peptide cross-linking biological_process
GO:0046872 metal ion binding molecular_function
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120718-1 Predicted to enable metal ion binding activity and protein-glutamine gamma-glutamyltransferase activity. Predicted to act upstream of or within peptide cross-linking. Human ortholog(s) of this gene implicated in autosomal recessive congenital ichthyosis 1. Orthologous to human TGM1 (transglutaminase 1).

Ensembl:

ensembl_id ENSDART00000041912

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045106 lncRNA downstream 292486 39940240 ~ 39942116 (-) True XLOC_022586
TCONS_00045105 lncRNA downstream 699708 39527970 ~ 39534894 (-) True XLOC_022579
TCONS_00045104 lncRNA downstream 699779 39527970 ~ 39534823 (-) False XLOC_022579
TCONS_00045103 lncRNA downstream 699873 39527970 ~ 39534729 (-) False XLOC_022579
TCONS_00045107 lncRNA upstream 25272 40276158 ~ 40286032 (-) False XLOC_022592
TCONS_00045109 lncRNA upstream 25272 40276158 ~ 40296806 (-) False XLOC_022592
TCONS_00045108 lncRNA upstream 25272 40276158 ~ 40296806 (-) False XLOC_022592
TCONS_00045110 lncRNA upstream 32237 40283123 ~ 40286011 (-) False XLOC_022592
TCONS_00045111 lncRNA upstream 32237 40283123 ~ 40296513 (-) False XLOC_022592
TCONS_00044519 mRNA downstream 39870 40185381 ~ 40194732 (-) True XLOC_022590
TCONS_00044518 mRNA downstream 274818 39958223 ~ 39959784 (-) True XLOC_022589
TCONS_00044517 mRNA downstream 275429 39958166 ~ 39959173 (-) False XLOC_022589
TCONS_00044514 mRNA downstream 385447 39807857 ~ 39849155 (-) True XLOC_022585
TCONS_00044513 mRNA downstream 450234 39774931 ~ 39784368 (-) True XLOC_022584
TCONS_00044521 mRNA upstream 6347 40257233 ~ 40295610 (-) False XLOC_022592
TCONS_00044523 mRNA upstream 275099 40525985 ~ 40536089 (-) False XLOC_022595
TCONS_00044524 mRNA upstream 276007 40526893 ~ 40536017 (-) False XLOC_022595
TCONS_00044526 mRNA upstream 278326 40529212 ~ 40536040 (-) True XLOC_022595
TCONS_00044528 mRNA upstream 504878 40755764 ~ 40766518 (-) True XLOC_022597
TCONS_00044516 other downstream 282196 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044515 other downstream 289024 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044508 other downstream 568144 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044502 other downstream 2074858 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044500 other downstream 2107033 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044525 other upstream 277775 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044527 other upstream 341931 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044540 other upstream 1036447 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044542 other upstream 1094858 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044546 other upstream 1503604 41754490 ~ 41762926 (-) True XLOC_022615

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_00205299_00213625.mRNA True 3159 mRNA 0.48 15 CI01000001 205299 ~ 213958 (+)