RNA id: TCONS_00045108


Basic Information

Item Value
RNA id TCONS_00045108
length 743
lncRNA type read_through
GC content 0.45
exon number 6
gene id XLOC_022592
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 40257233 ~ 40296806 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAACCCTGGAGAAAGTTCCAGGCCGTGAGTGCAGAGAAACTTGTCCTGTAAACCCATCAATCAAGCATCTCTGATTCGGCATGCGCTATCTTCGCCAGCACAATTCAACAATATGCATTTGGGCCTTGTAACCTCTACAGATGGCTTTGATAGAGATCAATTTATCGTCTTTTAGCATTGCTAAGCAGCTGAAGGATTTTCCAAGGCTCGTTCAGGATGCAGTGTGTCATTTCTGTCGCAAGGAGGCGCTCCAGATTGAGCAACAACCAATAGCAACAACACAGTGGGAATGTTGGTTTCAATTCTCTCAAAATAGAAGTGCTAGTTCATCGTTTTTTTCTTGGGAAGGAATCGCTTAGCGTAAGGAACTGCATACAAATGGTACAAATCATAGGGATCCTGAAAGAAGTATGGACAGATGGAGGACCTGAAGATATCGGTGCAAATCAAAAGaaataacaACCAAATCTGCCTGACTCTGCTAATCAGAAAGCACGATGGGGAGAAAGTAAATGACGGTTATGCAGGTCAGATGTGTCAAAGGTATAATCTCTGGATTTGGTGGCTGTGTGATAATTAGGCCCGAAGAAAGACGCCAGATGTAATGGCATTGCCCCGGACGATTTAATCTGAGCTAAGCCAACGCTGAGCCAACAGTACATTAAGATCAGCGCAAAATATGAGATCCAGGTCCTTGTAGCCCAAACCGCTGTCCTCATGGAGAACGTGACTGGCCGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045106 lncRNA downstream 334042 39940240 ~ 39942116 (-) True XLOC_022586
TCONS_00045105 lncRNA downstream 741264 39527970 ~ 39534894 (-) True XLOC_022579
TCONS_00045104 lncRNA downstream 741335 39527970 ~ 39534823 (-) False XLOC_022579
TCONS_00045103 lncRNA downstream 741429 39527970 ~ 39534729 (-) False XLOC_022579
TCONS_00045112 lncRNA upstream 81847 40378653 ~ 40407675 (-) False XLOC_022593
TCONS_00045113 lncRNA upstream 87971 40384777 ~ 40407945 (-) False XLOC_022593
TCONS_00045114 lncRNA upstream 98599 40395405 ~ 40407852 (-) True XLOC_022593
TCONS_00045115 lncRNA upstream 163146 40459952 ~ 40476899 (-) False XLOC_022594
TCONS_00045116 lncRNA upstream 163146 40459952 ~ 40480414 (-) False XLOC_022594
TCONS_00044520 mRNA downstream 25272 40234602 ~ 40250886 (-) True XLOC_022591
TCONS_00044519 mRNA downstream 81426 40185381 ~ 40194732 (-) True XLOC_022590
TCONS_00044518 mRNA downstream 316374 39958223 ~ 39959784 (-) True XLOC_022589
TCONS_00044517 mRNA downstream 316985 39958166 ~ 39959173 (-) False XLOC_022589
TCONS_00044514 mRNA downstream 427003 39807857 ~ 39849155 (-) True XLOC_022585
TCONS_00044523 mRNA upstream 229179 40525985 ~ 40536089 (-) False XLOC_022595
TCONS_00044524 mRNA upstream 230087 40526893 ~ 40536017 (-) False XLOC_022595
TCONS_00044526 mRNA upstream 232406 40529212 ~ 40536040 (-) True XLOC_022595
TCONS_00044528 mRNA upstream 458958 40755764 ~ 40766518 (-) True XLOC_022597
TCONS_00044529 mRNA upstream 475467 40772273 ~ 40773796 (-) False XLOC_022598
TCONS_00044516 other downstream 323752 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044515 other downstream 330580 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044508 other downstream 609700 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044502 other downstream 2116414 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044500 other downstream 2148589 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044525 other upstream 231855 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044527 other upstream 296011 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044540 other upstream 990527 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044542 other upstream 1048938 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044546 other upstream 1457684 41754490 ~ 41762926 (-) True XLOC_022615

Expression Profile

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