RNA id: TCONS_00045110


Basic Information

Item Value
RNA id TCONS_00045110
length 2795
lncRNA type read_through
GC content 0.37
exon number 2
gene id XLOC_022592
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 40257233 ~ 40296806 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tatatatatatatacatatatatatatatatatatgagtgagCATATGGAAAGAAAACGTCCATTTTTGTATGATCAGTTGGGGTGTATTTAGCCATTTAGTAAATCTCTGGCCTTGTCCCAGCTTGCAGTCAGACTTGGGACAGCCATTGTGTGCATGTGATCATTGGGTGTCCCGTTTTTGTAATTTGAACCCAGCAGActtctaatagacatctaaatgagGCTAAACAAGGCAAAACTTGGGCTTTCAGTGAAAATGTAGCAAACGTCTAAGAATAGCCctaaactagactagtcgtcaaatagacagattagacagactttgtatgtgtagtcattcttttctgtttattttgatgactagtctagctTTGGCCTTTTCTTAGACATctttttagccttgttttagccaagatgactatgtttagatgtctattagacatctattaaaacaataaaagcttACTAGGAAGAGTGCACATAATTTTTATTGAACAGATtgcccaacacaatctcacggcaattcgtaactttttgatttagtggctacttcGTATAAATTCATACAtcatctcattcgtacaatttaatacgatttgcttatcctccAATGACAATtttgtttaggggtggggtttgatgccacacctcttttttaaaatcgtagaTTTTCGGACGACTAAACTCGTacaaattaatacgaattagccagtAAACTAACAAAACTTAAAACAGTTACGCtacctcgtgagatcaggctggattttcCCCAAATGGAATACTAACAGGCAGTCTATGCCACACTACACAATGTGTAGATGCAAAGAAAGAACTGGCTTTCGGAAAGCACTTGGAACAaggcttaaagagatagttcacgcTAAAAAAACGACACAAAATATTCTTCTTCTAAAGATATTTCGAAGTAAGCTTGAAACTGTTAACCGTGGACTTTGATACAAAGCAAAACCTCCAGTATTAAATGCAGTGTTTATATAGTCTTACTTTGAGTGTTAAAACAAGATTACACCAACACTGCCATCACATATTATGTAACACTGACAGTGTTTATTTAACACTGGAGGATTTGCtgtgtagtgtttgtttttcccactaAGGATGTCAGTGGTTATCAATGTTTAGCTTTCTCCAAAAAAtctcagaagaaaaaaactcataaacgTTTATAGCCATTTGAGGGTGAATATTTgtgagtaaataaacattttgagtgaactatccctttaggaaaTGCCAGAGCTCTAAATCCAGACTTGCAATGTTATTTAAGTATGGACTGTATGTAGATGCTCTTACGTCAAGTACGTAAGTGTTGGTTCACAATCTTGAGGAATCTCACAAATATCTTTGGTATATGTTCTTCTTCGTCTCTTTCTCTTGTATATGCTTTTCCGCTTTGCAATGCTGCATCTCTTCTGGTCTTAATCCCCCAGGTTATGCAGGTCAGATGTGTCAAAGGTATAATCTCTGGATTTGGTGGCTGTGTGATAATTAGGCCCGAAGAAAGACGCCAGATGTAATGGCATTGCCCCGGACGATTTAATCTGAGCTAAGCCAACGCTGAGCCAACAGTACATTAAGGTCAGTTCAAATGAGACAAGAAGCTGTGAAAAATCTCCCATCTCGTACTCTAATATACGAATGCCTTGTCCGTGTCGCTTTCTAGTAGACACCACAATTCTCACTGTAGTGGTACCAAATTGACAAGTTAACAGATGGTAGTTCATGATTGGATGATCTTCAAAATTCATTTGCTATTGTGCACTACCTTCTGTCATATGTTACCAGCCTgttctcatgaggaaatgtaactatgtTTCAGATTAAAAAGTGGATAGTTTATACGATTTCATCCATAcgaaaacatgatttttaaaagtagGCATGCCCCCAAACCCCACCCCCAACCCTACCCCTCGTTGGGTCATGaccaaatcgtactaaaatgtacgaatgagatcaCACACATTACttagccactaaatctaaaagttaGGAACTGCATTGAGATTGCATTGAATGTTACTGCTAAAGGACGTCTTAACCGACATACTTAGGGGTCGTTAACAGAGTGACTTTGATTTTCAGTTTAAGGCACTAAAGGCAAAGGTGTCCAATCTTCCTCCTGGAGGGACACTGAGCTGCTGATTTTTTGCTCCGACCAGCTCAAATGCAAGTCTTTTAGCCAGTCATGAGCTAGACCCATACTTGTTGAGAATCTTTATATGCATCCTACTGTGTACTGCTGCCTTGAGAGTGAAAGTGCTGTGCGTGCCTTGTCCAATGTTGGTTATGCTGTTGAGTTTTGGTTGTTTGTTGACTAGATACATTCGATATACTTGTTACTAGTTTGTTATTAGTTTATTCTTTCTATTGCCATTATATTTTGTTAACACACTTGATTTTTTGCTTCTCAATAAATTGAAAATTTTTGACTCGTGTGGCCCTGCCTAAATGAGCACTTTAAAACTGAGTCTTGTTACTTAAATGGGGCTGTGAAAAACTCTTGTATCCCAATAGATGAATCTTGCCTGTGGCACGTTCTAATAGGACACCTAATTCTCACTACATCCATACCAAATTGTCACCTTATAAGAAACAGATGGTAGTTCATGATTAGAtgtccttaaaaaataaaaataaaaaattgtatttttgacTCCAAAGTCTAAACAAGCAGTTTAAATCTGGCATTCGTAAAATAaacgggggctcgtccgggatcaaaatgacttttaataattgttgttgtttccTGAGAGttactaattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045106 lncRNA downstream 341007 39940240 ~ 39942116 (-) True XLOC_022586
TCONS_00045105 lncRNA downstream 748229 39527970 ~ 39534894 (-) True XLOC_022579
TCONS_00045104 lncRNA downstream 748300 39527970 ~ 39534823 (-) False XLOC_022579
TCONS_00045103 lncRNA downstream 748394 39527970 ~ 39534729 (-) False XLOC_022579
TCONS_00044754 lncRNA upstream 308 40286319 ~ 40290602 (-) True XLOC_022592
TCONS_00045112 lncRNA upstream 92642 40378653 ~ 40407675 (-) False XLOC_022593
TCONS_00045113 lncRNA upstream 98766 40384777 ~ 40407945 (-) False XLOC_022593
TCONS_00045114 lncRNA upstream 109394 40395405 ~ 40407852 (-) True XLOC_022593
TCONS_00045115 lncRNA upstream 173941 40459952 ~ 40476899 (-) False XLOC_022594
TCONS_00044520 mRNA downstream 32237 40234602 ~ 40250886 (-) True XLOC_022591
TCONS_00044519 mRNA downstream 88391 40185381 ~ 40194732 (-) True XLOC_022590
TCONS_00044518 mRNA downstream 323339 39958223 ~ 39959784 (-) True XLOC_022589
TCONS_00044517 mRNA downstream 323950 39958166 ~ 39959173 (-) False XLOC_022589
TCONS_00044514 mRNA downstream 433968 39807857 ~ 39849155 (-) True XLOC_022585
TCONS_00044523 mRNA upstream 239974 40525985 ~ 40536089 (-) False XLOC_022595
TCONS_00044524 mRNA upstream 240882 40526893 ~ 40536017 (-) False XLOC_022595
TCONS_00044526 mRNA upstream 243201 40529212 ~ 40536040 (-) True XLOC_022595
TCONS_00044528 mRNA upstream 469753 40755764 ~ 40766518 (-) True XLOC_022597
TCONS_00044529 mRNA upstream 486262 40772273 ~ 40773796 (-) False XLOC_022598
TCONS_00044516 other downstream 330717 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044515 other downstream 337545 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044508 other downstream 616665 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044502 other downstream 2123379 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044500 other downstream 2155554 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044525 other upstream 242650 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044527 other upstream 306806 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044540 other upstream 1001322 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044542 other upstream 1059733 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044546 other upstream 1468479 41754490 ~ 41762926 (-) True XLOC_022615