RNA id: TCONS_00045114


Basic Information

Item Value
RNA id TCONS_00045114
length 671
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id XLOC_022593
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 40378653 ~ 40407945 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTTAAATGTGCTAGGACTTCCGGTTTCATATATTATGATTTGCTGTAAGTTTCAACGCTCGTTAAGCAGCTTGATTGCTTAGTTAACTTATAGCGTATAGCGCAAATAATTTATGCATTTCCTGTCATTTTATGATTATATACGGCTAATGAAATGTGTCATACATGTTACAAAATGGGAAAATACTGAATTGCCGAGCTGGCTTCCGGTTTCAGTGGAGTATACTAAATTTAGCTCCACAAAACAGagtgtatgggtgtttcccattgttgggtcgcggctggaagggcatctgctgagtaaaacatattctAGGTGTTTGGTTAACAGTGGTTCGTCCACGATCCGTCTCAGCAGGAACGCAGCGCTGCAGGAGCAGATGTGCAGACTGAGTAGCAGGAGGTGATGAAGGAGTTCAGGCTAAAACACATGATCTCACCTGTGTGTCACGCTGACGGCTGAACCACAAACACAACACTGTACTCACGGCAGAACACCATGAACAGATTTCCCTCTGACACTGACAAATGGAACTGGAGAAACACCCTGGATGGCATGAAGAAAGAAGCAAAGAAAAAAGGAGTGATTGATAGCGAGAAAAAGACTTTCATTGTGAGAGAGCTCAGTTTATAGCCACATAAAAATATGAATCTAGTTCATGAGTACTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045109 lncRNA downstream 98599 40276158 ~ 40296806 (-) False XLOC_022592
TCONS_00045108 lncRNA downstream 98599 40276158 ~ 40296806 (-) False XLOC_022592
TCONS_00045111 lncRNA downstream 98892 40283123 ~ 40296513 (-) False XLOC_022592
TCONS_00044754 lncRNA downstream 104803 40286319 ~ 40290602 (-) True XLOC_022592
TCONS_00045107 lncRNA downstream 109373 40276158 ~ 40286032 (-) False XLOC_022592
TCONS_00045115 lncRNA upstream 52100 40459952 ~ 40476899 (-) False XLOC_022594
TCONS_00045116 lncRNA upstream 52100 40459952 ~ 40480414 (-) False XLOC_022594
TCONS_00045117 lncRNA upstream 52100 40459952 ~ 40506091 (-) False XLOC_022594
TCONS_00044522 lncRNA upstream 52100 40459952 ~ 40506103 (-) False XLOC_022594
TCONS_00045118 lncRNA upstream 52100 40459952 ~ 40506113 (-) True XLOC_022594
TCONS_00044521 mRNA downstream 99795 40257233 ~ 40295610 (-) False XLOC_022592
TCONS_00044520 mRNA downstream 144519 40234602 ~ 40250886 (-) True XLOC_022591
TCONS_00044519 mRNA downstream 200673 40185381 ~ 40194732 (-) True XLOC_022590
TCONS_00044518 mRNA downstream 435621 39958223 ~ 39959784 (-) True XLOC_022589
TCONS_00044517 mRNA downstream 436232 39958166 ~ 39959173 (-) False XLOC_022589
TCONS_00044523 mRNA upstream 118133 40525985 ~ 40536089 (-) False XLOC_022595
TCONS_00044524 mRNA upstream 119041 40526893 ~ 40536017 (-) False XLOC_022595
TCONS_00044526 mRNA upstream 121360 40529212 ~ 40536040 (-) True XLOC_022595
TCONS_00044528 mRNA upstream 347912 40755764 ~ 40766518 (-) True XLOC_022597
TCONS_00044529 mRNA upstream 364421 40772273 ~ 40773796 (-) False XLOC_022598
TCONS_00044516 other downstream 442999 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044515 other downstream 449827 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044508 other downstream 728947 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044502 other downstream 2235661 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044500 other downstream 2267836 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044525 other upstream 120809 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044527 other upstream 184965 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044540 other upstream 879481 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044542 other upstream 937892 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044546 other upstream 1346638 41754490 ~ 41762926 (-) True XLOC_022615

Expression Profile

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