RNA id: TCONS_00045118


Basic Information

Item Value
RNA id TCONS_00045118
length 2764
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id XLOC_022594
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 40459952 ~ 40506113 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCAGAGCTCATTAAAGACCATCAGAGCTTGTATTGATTTGTGTCTTTACTTTTCTGCAGATGGACGGCGCTGATTGGCTGGTCGAGCAGGACGTGAAAAATTGCTACTGCTGTGGACAGGAGACGACTCACGTTGGACCTGGAAGGGAACAAGTTTTAATGTTTTGGGACTTCCAGCCGGTCTATAAACCCTTGGAGCTCCTTCCTGAAGGTCTTCATTTGAGAGTTGATGCGGAAGAGTAGCTCATGCTCTCTGATCCGACCACCATCATCCTCATCTTCCATACGACCAAAAAGATCGCCGTTAGCCACAAAGACCCGAGCCTCTGCGATGATGTTACTAGTGTCGGCTATAAGACGGTCAATGGTCCGTCCCAATCGCTCTGCCTCAGCACGGATGTCAATCATCTGTTGCCTGTCCCGTATGGAGCGTGAGAGGAGGCGGGCAGATTCAGGagaataaagcgaacgagttggCGTGAGGCACCGAGCATTGCGGACCTCCTCCGAGTCACTTTCTCCTCCAACTGGACCCTCGCGTTTTCGATGGGGAGGGAGGCGAGATGAGGAAGAGTCATCATCACTTCCTCTACGTCCTCCGATTGCAGGACCACCATCACTTTCTGCATCACTGTCACGTGGCGTCACGGCTAGATGAGATGCTAGGTCATATCGTTGCATGTTAGAAAGCAGCACACGGTTCTCATATTGTAGTTGCATCACTTTCCCGCTCAGTTCATTGATCTGCTTCCTTGCCGCCTTCAGCTCCTCCTGCAAGGCCTCAGATTTGGAGCTGTCTCCTCCACCATTATTGGAACCTGTTGCATTACTACCTGAAGCATGCCTTGTACCCTCTTTAAAGCGCAATTTATTCAGCTCACTTGTCACTCTCTTATTCTGTTCCTCTACATCCGCGAGGTTCCTCCTCAGAAGTTCGGCCTCATCCTCCACCAACTGCAGTTGTTGCCTCAGCTCCGACAGCTCTGAACCCTGTTCGCGCCCTATTCCTCCTTCCGCACCGGACAAGCCCCCATTAGAGGATTCATCCCCACGAAGATCATCCAATTCTGCTCTCAGACCACGGTTCTCGACCTCCAGTTCCACAATTTTTCGTCCAAGGATGTTGGCCTCTTCTTCCACCAGCCGCAAGCGGAGTTTCAGTTCTGATTCCCTTGTAGTGGGTGGACCACCAGCTTCCCCCTTTGGATGAGGGCTATCCAAATCCCCATAGAAGGATCGATACTTCTGAAGTTCTTGCTCCAGGCGGTCCTTTTCCTTGTCGATTTTTGCCATTTTCTTTCTCATTAAGGTAGCCTCCTCTTTAATGAAGGCCAGCTGGCATTTCAGGTCCTCACTGTCCTCCTGTTGTGTTGAAGGTATGTGGATGTTAGATTCAGAGACatttaatagacatttaaaagGTCAATATTTATGCACAGAAACCTGTAACGAATACCATgaaagtcattggttacaggtttccattatTCTTTGCAACAGGTTTCAAACAAGGGTGAGTGAattgttatttttgggtgaatacaATTTTTGTTGGTTGAAATTttgttttaatactttatatatctTTCCAAATAATGGCATAACCTTGAAACTTCATCACTTTTTAATCGCTTAAAACAAACGACCACATACTGATCAACGTTATTGCATTGTTCTTACCTCTGTAGGAGTCTGGGTCTTCCTCTCAGGCTTTTGTGCATCTTTGCTTCCTCTTCGTTTCTGAGACTGGATACAACAGACATATAtctatgtatacatatatatagttatattaaaGCATATTTAGATGCATTTGTATCCCCCCTACCTCTTTGGCCTTATCTAGCTCAAGTTGCAGGGCCTGTTTGGTGACTTCCACCTCGATAAGTTTCTGTCTCAGCCTTTCGTTTTCATCTTCAGTCTTTGTTCGTTTCTCCTCCACGTTTTCCAGCTCATGGTGGAGTCTCACAGAAACATCTTTGGCAACCTGTGGTTAAATATCATAAATATCATTGTTGTTCTCTTGAGAAAAACACTTAACCTTAGGTTACTCGGGGGAGACTGTAATAAATGCACTGATGCTTTTGGATAAATGACAAGttagtaattaaatgtaaattccCTGGGGGACGGATAATTAATCATGAACTATCTCTGAATGCCAGATAAAAACATGGGTACTTGCCTTTAAATCTTGTTCTAAGCTCCTCAGGAGGTCCTCGTCGATTTCTCCGGTCTGCGCATAGCGTAGTCGTTTACGCTCTGCTTTGCGGAGTCGATACTGAAGGATGCGACAGTTCTTATTCGCTCTTTCCAGCTCACGCCGCATTTCATCTAGCTGACACGTGTCTTCCTCGTAGAAGGTGTCGCGCATCTCCTCCATCTCCGTCCGCATCTCTTCAATCGTGCTCTATGAAAAACCAGAGCATGCTtattaataagaataaaagatgggtgggtggatgggtggaggGGTTAGTGATATCTTATTGTTTTGCATTATACTGGTGTACAGTTGAAGAAAGAATTATTTGCCCTtgtgaattattagctcccctattttttcccccaatttttgtttaatagaaagatgtttaacacttttctaaacataatagttttaataattgttaAGAACTTTCTAGATATAGTACTTAGCTTAAAGtaacaattaaaggcttaacaaggttaactaggttaattaggcaagccattgtatggattgtttgttctgtagaccattaaAAATGATGTGTGTTATCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045113 lncRNA downstream 52007 40384777 ~ 40407945 (-) False XLOC_022593
TCONS_00045114 lncRNA downstream 52100 40395405 ~ 40407852 (-) True XLOC_022593
TCONS_00045112 lncRNA downstream 52277 40378653 ~ 40407675 (-) False XLOC_022593
TCONS_00045111 lncRNA downstream 163439 40283123 ~ 40296513 (-) False XLOC_022592
TCONS_00044754 lncRNA downstream 169350 40286319 ~ 40290602 (-) True XLOC_022592
TCONS_00045120 lncRNA upstream 490338 40996451 ~ 40999225 (-) False XLOC_022607
TCONS_00045119 lncRNA upstream 490338 40996451 ~ 40999225 (-) True XLOC_022607
TCONS_00045121 lncRNA upstream 797399 41303512 ~ 41305045 (-) True XLOC_022609
TCONS_00045122 lncRNA upstream 1106656 41612769 ~ 41618019 (-) True XLOC_022612
TCONS_00044755 lncRNA upstream 1151067 41657180 ~ 41659516 (-) True XLOC_022614
TCONS_00044521 mRNA downstream 164342 40257233 ~ 40295610 (-) False XLOC_022592
TCONS_00044520 mRNA downstream 209066 40234602 ~ 40250886 (-) True XLOC_022591
TCONS_00044519 mRNA downstream 265220 40185381 ~ 40194732 (-) True XLOC_022590
TCONS_00044518 mRNA downstream 500168 39958223 ~ 39959784 (-) True XLOC_022589
TCONS_00044517 mRNA downstream 500779 39958166 ~ 39959173 (-) False XLOC_022589
TCONS_00044523 mRNA upstream 19872 40525985 ~ 40536089 (-) False XLOC_022595
TCONS_00044524 mRNA upstream 20780 40526893 ~ 40536017 (-) False XLOC_022595
TCONS_00044526 mRNA upstream 23099 40529212 ~ 40536040 (-) True XLOC_022595
TCONS_00044528 mRNA upstream 249651 40755764 ~ 40766518 (-) True XLOC_022597
TCONS_00044529 mRNA upstream 266160 40772273 ~ 40773796 (-) False XLOC_022598
TCONS_00044516 other downstream 507546 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044515 other downstream 514374 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044508 other downstream 793494 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044502 other downstream 2300208 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044500 other downstream 2332383 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044525 other upstream 22548 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044527 other upstream 86704 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044540 other upstream 781220 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044542 other upstream 839631 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044546 other upstream 1248377 41754490 ~ 41762926 (-) True XLOC_022615

Expression Profile

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