RNA id: TCONS_00044526


Basic Information

Item Value
RNA id TCONS_00044526
length 765
RNA type mRNA
GC content 0.53
exon number 3
gene id XLOC_022595
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 40525985 ~ 40536089 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATCTCAGAGGAGCCGTGAAAACATTATTGTGTTCATCTGTGTCGAGCGAATTCTGGCGTTACCGATCATTTCACATCAATAAACGAACAATGATCGATCATCCGGTGACTAGCAGATGAGCCAGATCTAACCGTCGCTTAAAAAAGGCGAAAATTCGGCTACATTGTCAGgagaaagcaAGTCAAACAGATTTGGATTAagggaaggtATGGCTAGCTGCGGTGAGGTCAACCTAACCGTGGACTCCTTGACTTCGGGCAAGAAGGTAAGTGGAGAGGCCGTACCTGAGGGAAGTGGGTCACCTTCATCTCCTTCTCTGCCCGTCCCGGAGTGTCCAATCTGCCTGCAGAGCTGCGTCCACCCTGTCCGCCTGCCGTGCCGCCACATTTTCTGTTTCCTCTGCGTAAAAGGAGCTTCCTGGCACAGTAAACGATGCGCCCTGTGTAGACGCGAAGTCCCTGAAGACTTCCTAGAGCGTCCGACTTTGCTCTCGCCTGAAGAGCTGAAAGCCTCTGCGACCGGTGGATGCGGGACGGGGAGCAGCGGTCATGCTTGGTACTACGAGGGGCGTAACGGATGGTGGCAGTACGACGAGCGGACTAGCCGAGAGCTGGAAGATGCGTTCAGCAAAGGCAAGAAGAGCGCCGAGATGCTAATTGCCGGATTCTTGTACGTAGCCGACTTGGAAAACATGGTGCAGTACAGGAGGAACGAACacgggaggaggaggaggatgaagagagATGTTGTGGACATCCCTAAAA

Function

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0072572 poly-ADP-D-ribose binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-5997 Predicted to enable poly-ADP-D-ribose binding activity and ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of canonical Wnt signaling pathway; protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in cytosol. Predicted to be active in cytoplasm and nucleus. Is expressed in female organism. Orthologous to human RNF146 (ring finger protein 146).

Ensembl:

ensembl_id ENSDART00000140623

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045118 lncRNA downstream 23099 40459952 ~ 40506113 (-) True XLOC_022594
TCONS_00044522 lncRNA downstream 23109 40459952 ~ 40506103 (-) False XLOC_022594
TCONS_00045117 lncRNA downstream 23121 40459952 ~ 40506091 (-) False XLOC_022594
TCONS_00045116 lncRNA downstream 48798 40459952 ~ 40480414 (-) False XLOC_022594
TCONS_00045115 lncRNA downstream 52313 40459952 ~ 40476899 (-) False XLOC_022594
TCONS_00045120 lncRNA upstream 460411 40996451 ~ 40999225 (-) False XLOC_022607
TCONS_00045119 lncRNA upstream 460411 40996451 ~ 40999225 (-) True XLOC_022607
TCONS_00045121 lncRNA upstream 767472 41303512 ~ 41305045 (-) True XLOC_022609
TCONS_00045122 lncRNA upstream 1076729 41612769 ~ 41618019 (-) True XLOC_022612
TCONS_00044755 lncRNA upstream 1121140 41657180 ~ 41659516 (-) True XLOC_022614
TCONS_00044521 mRNA downstream 233602 40257233 ~ 40295610 (-) False XLOC_022592
TCONS_00044520 mRNA downstream 278326 40234602 ~ 40250886 (-) True XLOC_022591
TCONS_00044519 mRNA downstream 334480 40185381 ~ 40194732 (-) True XLOC_022590
TCONS_00044518 mRNA downstream 569428 39958223 ~ 39959784 (-) True XLOC_022589
TCONS_00044517 mRNA downstream 570039 39958166 ~ 39959173 (-) False XLOC_022589
TCONS_00044528 mRNA upstream 219724 40755764 ~ 40766518 (-) True XLOC_022597
TCONS_00044529 mRNA upstream 236233 40772273 ~ 40773796 (-) False XLOC_022598
TCONS_00044530 mRNA upstream 236289 40772329 ~ 40788933 (-) False XLOC_022598
TCONS_00044531 mRNA upstream 239311 40775351 ~ 40776046 (-) True XLOC_022599
TCONS_00044532 mRNA upstream 240197 40776237 ~ 40779334 (-) True XLOC_022600
TCONS_00044516 other downstream 576806 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044515 other downstream 583634 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044508 other downstream 862754 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044502 other downstream 2369468 38151415 ~ 38159744 (-) True XLOC_022570
TCONS_00044500 other downstream 2401643 38127452 ~ 38127569 (-) True XLOC_022569
TCONS_00044527 other upstream 56777 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044540 other upstream 751293 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044542 other upstream 809704 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044546 other upstream 1218450 41754490 ~ 41762926 (-) True XLOC_022615
TCONS_00044552 other upstream 1867524 42403564 ~ 42403680 (-) True XLOC_022623

Expression Profile

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