RNA id: TCONS_00044528


Basic Information

Item Value
RNA id TCONS_00044528
length 865
RNA type mRNA
GC content 0.43
exon number 6
gene id XLOC_022597
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 40755764 ~ 40766518 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCTACTTCCGCTTTACCGGTAAGCGAAAGCGATCTGTTCTGTAGCCTGTACATGAGATTCATTTGTGTCCTGAAGTTTGTCTTGTCAGTGTCTATTCAAAGATGTCTAAGCCGAAATTAATAGTGTTCGACCTTGATTACACACTCTGGCCATTCTGGGTTGACACTCACGTCCAAGCGCCATTTCACATCGATGACGAGGGCATAGTGAAGGATTCCAGACGTGAAAAAGTTCCCATTTATCATGATACAGAAAAGATCCTGCGCTCACTCCATAGTCAAGGCTACAAGATCGGCATCGCATCACGGACCAGTGAGACTGAAGGAGCCAATCAACTACTGTCACTATATAATCTCGACCAATACATCTCATTCAAGGAGATCTACCCGGGGTCAAAGGTCACTCACTTTAAAAGGCTGAAATCTGCCAGCGGCGTCCAGTTTTCTGACATGATGTTTTTTGATGACGAGGAAAGGAACATCGTGGAGGTCGGCAGGCTCGGTGTTACCTGTGTGCTGGTTTTCAACGCGATCACCTGCAATCTAGTCAATACAGCACTGGAGCAGTTCAGCAAGAAGCAGTGATGAAGGGGAATCCATTCGCAGAGCAGTCTGACGTGTTCACGGGTCATTTCTGTTTAAACATTTCAGTGCAATtgctgcaaatatttatttatgttttataactattagattttaatatttggtCTACTCGTGATGCAGGTGTTCATTAGTTTGCCATATATAAATTGGTTGACtccatcattttttaaaaagtgacattCACCTGTGCTTATTTTTACTTCCAATGGTGTTTATGCACAGCCAGTGTTTTCTATTAccaataaacttctggtgaatggTT

Function

GO:

id name namespace
GO:0016791 phosphatase activity molecular_function
GO:0003993 acid phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090311-51 Predicted to enable acid phosphatase activity. Orthologous to human MDP1 (magnesium dependent phosphatase 1).

Ensembl:

ensembl_id ENSDART00000127420

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045118 lncRNA downstream 249651 40459952 ~ 40506113 (-) True XLOC_022594
TCONS_00044522 lncRNA downstream 249661 40459952 ~ 40506103 (-) False XLOC_022594
TCONS_00045117 lncRNA downstream 249673 40459952 ~ 40506091 (-) False XLOC_022594
TCONS_00045116 lncRNA downstream 275350 40459952 ~ 40480414 (-) False XLOC_022594
TCONS_00045115 lncRNA downstream 278865 40459952 ~ 40476899 (-) False XLOC_022594
TCONS_00045120 lncRNA upstream 229933 40996451 ~ 40999225 (-) False XLOC_022607
TCONS_00045119 lncRNA upstream 229933 40996451 ~ 40999225 (-) True XLOC_022607
TCONS_00045121 lncRNA upstream 536994 41303512 ~ 41305045 (-) True XLOC_022609
TCONS_00045122 lncRNA upstream 846251 41612769 ~ 41618019 (-) True XLOC_022612
TCONS_00044755 lncRNA upstream 890662 41657180 ~ 41659516 (-) True XLOC_022614
TCONS_00044523 mRNA downstream 219675 40525985 ~ 40536089 (-) False XLOC_022595
TCONS_00044526 mRNA downstream 219724 40529212 ~ 40536040 (-) True XLOC_022595
TCONS_00044524 mRNA downstream 219747 40526893 ~ 40536017 (-) False XLOC_022595
TCONS_00044521 mRNA downstream 460154 40257233 ~ 40295610 (-) False XLOC_022592
TCONS_00044520 mRNA downstream 504878 40234602 ~ 40250886 (-) True XLOC_022591
TCONS_00044529 mRNA upstream 5755 40772273 ~ 40773796 (-) False XLOC_022598
TCONS_00044530 mRNA upstream 5811 40772329 ~ 40788933 (-) False XLOC_022598
TCONS_00044531 mRNA upstream 8833 40775351 ~ 40776046 (-) True XLOC_022599
TCONS_00044532 mRNA upstream 9719 40776237 ~ 40779334 (-) True XLOC_022600
TCONS_00044533 mRNA upstream 21839 40788357 ~ 40790196 (-) True XLOC_022598
TCONS_00044527 other downstream 162830 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044525 other downstream 219724 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044516 other downstream 803358 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044515 other downstream 810186 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044508 other downstream 1089306 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044540 other upstream 520815 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044542 other upstream 579226 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044546 other upstream 987972 41754490 ~ 41762926 (-) True XLOC_022615
TCONS_00044552 other upstream 1637046 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044554 other upstream 1742216 42508734 ~ 42515002 (-) True XLOC_022624

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_17507574_17510080.mRNA True 1223 mRNA 0.36 5 CI01000000 17507574 ~ 17510895 (+)