RNA id: TCONS_00044529


Basic Information

Item Value
RNA id TCONS_00044529
length 868
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_022598
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 40772273 ~ 40790196 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATCAAAGAGTGGATGATGAATAAACTTTCGGAATTCCACTGCAAGCATACAAGTCCTAGACACGATCTTGCAAAGCCGGGTCCGAGCAGTTTGCCTTCTCAAAAACAGCTGGAAGAAATTTTCGACTTTGAGAAGCTTGCAGAGTTATTACAAGTAGAAGACACCGTGAACAAATGTAAACTGCCCCTGTCACCATTTACGGAGGTCTGGCGCAATGTCTACATTGGAGATGAAGAGACAGCAAGAAATCGACGCAAACTGATGGAATTGGGAGTCACCCATATCCTAAATGCAGCAGCGCCGAAGATGGCCTGGTTGGGAAAACTAAGTAAGAGTGGAGTCAACGGAAAGGTCCTTACAGGACCGGAATATTATGAAGGCATGGACATCAAATATTGCGGCTTGCCTACAACATACGACCAGTCCAGAATCATCAGATACTTCTGGCCAGCTGGCAAGTTCATCAGAAAGGCCCTGAGAAACCCAGACAATGTCCTGTTCATTCACTGCAGGCATGGTGTCAGTCACGCGCCAACACTGTTTGTAGCATATCTGATGATGTACTACAAAATACCTCTGGAGGAAGCCTTGAGTTATGTCACCAGGGCGAGGCGCATCAGGCTCTTCACATCCTTTCTGCTCCAGTTGTCGTTACTTGAAcccaagaaaaagaaagaaatcaaacGGCAACAAGGCATAGTAATATACAACTGAATAAACAACACTGCAcagaaaggtcgctggtttgagtgccACACAGAAAGGCCTTCTGGtctagccaggactcaaaccatcGACCTTAGCCctaagctatttttatttttcagctttctttttaTGTCTCTGGATATatgtgcactttaaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000133414

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045118 lncRNA downstream 266160 40459952 ~ 40506113 (-) True XLOC_022594
TCONS_00044522 lncRNA downstream 266170 40459952 ~ 40506103 (-) False XLOC_022594
TCONS_00045117 lncRNA downstream 266182 40459952 ~ 40506091 (-) False XLOC_022594
TCONS_00045116 lncRNA downstream 291859 40459952 ~ 40480414 (-) False XLOC_022594
TCONS_00045115 lncRNA downstream 295374 40459952 ~ 40476899 (-) False XLOC_022594
TCONS_00045120 lncRNA upstream 222655 40996451 ~ 40999225 (-) False XLOC_022607
TCONS_00045119 lncRNA upstream 222655 40996451 ~ 40999225 (-) True XLOC_022607
TCONS_00045121 lncRNA upstream 529716 41303512 ~ 41305045 (-) True XLOC_022609
TCONS_00045122 lncRNA upstream 838973 41612769 ~ 41618019 (-) True XLOC_022612
TCONS_00044755 lncRNA upstream 883384 41657180 ~ 41659516 (-) True XLOC_022614
TCONS_00044528 mRNA downstream 5755 40755764 ~ 40766518 (-) True XLOC_022597
TCONS_00044523 mRNA downstream 236184 40525985 ~ 40536089 (-) False XLOC_022595
TCONS_00044526 mRNA downstream 236233 40529212 ~ 40536040 (-) True XLOC_022595
TCONS_00044524 mRNA downstream 236256 40526893 ~ 40536017 (-) False XLOC_022595
TCONS_00044521 mRNA downstream 476663 40257233 ~ 40295610 (-) False XLOC_022592
TCONS_00044531 mRNA upstream 1555 40775351 ~ 40776046 (-) True XLOC_022599
TCONS_00044532 mRNA upstream 2441 40776237 ~ 40779334 (-) True XLOC_022600
TCONS_00044533 mRNA upstream 14561 40788357 ~ 40790196 (-) True XLOC_022598
TCONS_00044534 mRNA upstream 17637 40791433 ~ 40792128 (-) True XLOC_022601
TCONS_00044535 mRNA upstream 18523 40792319 ~ 40796992 (-) True XLOC_022602
TCONS_00044527 other downstream 179339 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044525 other downstream 236233 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044516 other downstream 819867 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044515 other downstream 826695 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044508 other downstream 1105815 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044540 other upstream 513537 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044542 other upstream 571948 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044546 other upstream 980694 41754490 ~ 41762926 (-) True XLOC_022615
TCONS_00044552 other upstream 1629768 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044554 other upstream 1734938 42508734 ~ 42515002 (-) True XLOC_022624

Expression Profile

//