RNA id: TCONS_00044539


Basic Information

Item Value
RNA id TCONS_00044539
length 1927
RNA type mRNA
GC content 0.38
exon number 6
gene id XLOC_022606
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 40872688 ~ 40895168 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTAAGCGGCTCCGTCCGGCCCTTTATATCTCACGCTTTAACCAGTTCATAATCTCTGAGCGCTGAATTCAGCTGCATGCGTGTTAAAGTTCAGATGCCAAGCGGAGAGATGATAACTGGATTTCTTCTGACTATTATTTTACTGTCACCTGTCGTGGCTCAGGATCTTTGTAAAGAAAGCAAAGATGGATTCAAAGTCAGGATCAGCTTAAAAACAGCCCTCGGAAATGACGCCTACGAGTGGAATGAGAGTGAGAAGTTTCTCTTCAGATCTACTCTGGCGTATGCGATGAGGAAAAAAACTGGGGAGGACACGTATAAcattgaAAACATACTGGTGTGCAATGATACAAAGAGAGTGTCATTCATCTTTGTGGTGACGTTGCCAGCGGACCCAACTCAACTGATTCCGAAAGAAGAGGTGGAGCGAGCAGTGAGGCAGAGCAAACATCGCATCAACAATGCTTTCCTGCTATCAGACATGACTCTTGAGTTTGTGGGGGTCCCACCAACGCTGGCGGTCCCCATTCAGTACAACACTCCTCCGTGGCTCATTGTGTTCGGGGTGGTCATTGGCATTGTGGCCGTAGGCATTGTGGCACTGCTGATGTCCACAGTCAGCAAAAGACGACGAGCCAAAGCCAAAGATGCCGGATTTGATCAAGATGGAGATGATGAAGGAATAGTCAAAGAGAATGGAACTGCACTTTCCGGCCTTAATAAGAAAGACGGCGTCTACAATCAAGCCTTCTCCAATGATGAGCGCTTCACCAAACTGTAGCAAACAAAGCCAGATTCAGTAACACCTCACCTTTAAAGTAATTCAGATATGCCAAAGAATAACATTCCCTCAACCTTAGACTGTCTGGGTCTGCACAGAAATAAGACTTATTcgtaatttatttgtattataaaagcCAGATTTACTATAAAACATGCTGAAGGTTGACTATGAGCAGATTAAAGAATGCAGAcgaacactacactgtaaaacatgctgaattccacacaattgatttgtgttggtataaaatgaaggaattaggttaacttattagtttttacaaatttaagtggattgaacgtaaaataatgaagttgtcccccaaacaactaagaattgtgttgttttagcttatttcaaataagtagtttgatcaaACAGTGAACATATTTTTTTGGTCTAACTAAACCCACTAACAGCGCCGCATATTGAAAATAGTGTGCTTTAGTAATCCAAAACAGATTGCATGCAGCGACAATCACAGCAATTCAAGCACAAAATGTATTAAGACATGTTTTTAGGGGGcaataaataatgacacaaaacCTGTAAATTGAACGCAACACTTGTAGATCACATTGCTGGTTCTTATCATAAATAAGGTGTCAGAAAAAGCAACTCGTACAGATGCATATGCAGTAAATAGGCCCACATGgtgtgcagaattccgcagattttttagcccatcattaattcagtttttttacttgagtaaatgtgtgtaaatctatatttattcagtttttacattaattacagtaatattattgactaatatgaaaatgttcatccgatttatttacaatgcagtttgcacagtaatgttttctgtcttttagtagagatattatatgagacttgctttgtttaccaaataaaggtaatctaattggatttgaattgtaaacattaaataaaaaatttaaaacatataattttttatttcacatattaaggttttagttatgagactcccaaaataatttcgcagaaatccgcagattgtTAGCAgatgcagaaatagcaaaaaaaaaaaacaattccgtCTGCCCCAAGCAATAAGGTCAGCCATAATGTCTATGACTTTTATTGCTGATTTTCACTGTGCCTTTAATAAATCCTGATAGTTTTTAACACCAAAAA

Function

GO:

id name namespace
GO:0035774 positive regulation of insulin secretion involved in cellular response to glucose stimulus biological_process
GO:0035543 positive regulation of SNARE complex assembly biological_process
GO:0045956 positive regulation of calcium ion-dependent exocytosis biological_process
GO:0051957 positive regulation of amino acid transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-43 Predicted to be involved in positive regulation of amino acid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human CLTRN (collectrin, amino acid transport regulator).

Ensembl:

ensembl_id ENSDART00000061037

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045118 lncRNA downstream 366575 40459952 ~ 40506113 (-) True XLOC_022594
TCONS_00044522 lncRNA downstream 366585 40459952 ~ 40506103 (-) False XLOC_022594
TCONS_00045117 lncRNA downstream 366597 40459952 ~ 40506091 (-) False XLOC_022594
TCONS_00045116 lncRNA downstream 392274 40459952 ~ 40480414 (-) False XLOC_022594
TCONS_00045115 lncRNA downstream 395789 40459952 ~ 40476899 (-) False XLOC_022594
TCONS_00045120 lncRNA upstream 101283 40996451 ~ 40999225 (-) False XLOC_022607
TCONS_00045119 lncRNA upstream 101283 40996451 ~ 40999225 (-) True XLOC_022607
TCONS_00045121 lncRNA upstream 408344 41303512 ~ 41305045 (-) True XLOC_022609
TCONS_00045122 lncRNA upstream 717601 41612769 ~ 41618019 (-) True XLOC_022612
TCONS_00044755 lncRNA upstream 762012 41657180 ~ 41659516 (-) True XLOC_022614
TCONS_00044538 mRNA downstream 54896 40815374 ~ 40817792 (-) True XLOC_022605
TCONS_00044537 mRNA downstream 58608 40813350 ~ 40814080 (-) True XLOC_022604
TCONS_00044536 mRNA downstream 60569 40810286 ~ 40812119 (-) True XLOC_022603
TCONS_00044535 mRNA downstream 75696 40792319 ~ 40796992 (-) True XLOC_022602
TCONS_00044534 mRNA downstream 80560 40791433 ~ 40792128 (-) True XLOC_022601
TCONS_00044541 mRNA upstream 417916 41313084 ~ 41585776 (-) True XLOC_022610
TCONS_00044543 mRNA upstream 734335 41629503 ~ 41651759 (-) True XLOC_022613
TCONS_00044544 mRNA upstream 844553 41739721 ~ 41762956 (-) False XLOC_022615
TCONS_00044545 mRNA upstream 858748 41753916 ~ 41762797 (-) False XLOC_022615
TCONS_00044547 mRNA upstream 905238 41800406 ~ 41821825 (-) False XLOC_022616
TCONS_00044527 other downstream 279754 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044525 other downstream 336648 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044516 other downstream 920282 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044515 other downstream 927110 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044508 other downstream 1206230 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044540 other upstream 392165 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044542 other upstream 450576 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044546 other upstream 859322 41754490 ~ 41762926 (-) True XLOC_022615
TCONS_00044552 other upstream 1508396 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044554 other upstream 1613566 42508734 ~ 42515002 (-) True XLOC_022624

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_17478377_17481058.mRNA True 1567 mRNA 0.40 3 CI01000000 17478377 ~ 17482171 (+)