RNA id: TCONS_00044540


Basic Information

Item Value
RNA id TCONS_00044540
length 117
RNA type rRNA
GC content 0.51
exon number 1
gene id XLOC_022608
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 41287333 ~ 41287449 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCCACAGgcgtatcaccctgcagcccaagactggttactcactgaagcaaagcagggctgagcctggtcagtacctagatgggtgACCACATggtaaaactaggttgctgttgtaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000176512

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045120 lncRNA downstream 288108 40996451 ~ 40999225 (-) False XLOC_022607
TCONS_00045119 lncRNA downstream 288108 40996451 ~ 40999225 (-) True XLOC_022607
TCONS_00045118 lncRNA downstream 781220 40459952 ~ 40506113 (-) True XLOC_022594
TCONS_00044522 lncRNA downstream 781230 40459952 ~ 40506103 (-) False XLOC_022594
TCONS_00045117 lncRNA downstream 781242 40459952 ~ 40506091 (-) False XLOC_022594
TCONS_00045121 lncRNA upstream 16063 41303512 ~ 41305045 (-) True XLOC_022609
TCONS_00045122 lncRNA upstream 325320 41612769 ~ 41618019 (-) True XLOC_022612
TCONS_00044755 lncRNA upstream 369731 41657180 ~ 41659516 (-) True XLOC_022614
TCONS_00045123 lncRNA upstream 567690 41855139 ~ 41857255 (-) False XLOC_022617
TCONS_00045124 lncRNA upstream 567690 41855139 ~ 41857279 (-) False XLOC_022617
TCONS_00044539 mRNA downstream 392165 40872688 ~ 40895168 (-) True XLOC_022606
TCONS_00044538 mRNA downstream 469541 40815374 ~ 40817792 (-) True XLOC_022605
TCONS_00044537 mRNA downstream 473253 40813350 ~ 40814080 (-) True XLOC_022604
TCONS_00044536 mRNA downstream 475214 40810286 ~ 40812119 (-) True XLOC_022603
TCONS_00044535 mRNA downstream 490341 40792319 ~ 40796992 (-) True XLOC_022602
TCONS_00044541 mRNA upstream 25635 41313084 ~ 41585776 (-) True XLOC_022610
TCONS_00044543 mRNA upstream 342054 41629503 ~ 41651759 (-) True XLOC_022613
TCONS_00044544 mRNA upstream 452272 41739721 ~ 41762956 (-) False XLOC_022615
TCONS_00044545 mRNA upstream 466467 41753916 ~ 41762797 (-) False XLOC_022615
TCONS_00044547 mRNA upstream 512957 41800406 ~ 41821825 (-) False XLOC_022616
TCONS_00044527 other downstream 694399 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044525 other downstream 751293 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044516 other downstream 1334927 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044515 other downstream 1341755 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044508 other downstream 1620875 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044542 other upstream 58295 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044546 other upstream 467041 41754490 ~ 41762926 (-) True XLOC_022615
TCONS_00044552 other upstream 1116115 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044554 other upstream 1221285 42508734 ~ 42515002 (-) True XLOC_022624
TCONS_00044558 other upstream 1548676 42836125 ~ 42876485 (-) False XLOC_022629