RNA id: TCONS_00045121


Basic Information

Item Value
RNA id TCONS_00045121
length 1424
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_022609
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 41303512 ~ 41305045 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtctcgcgacttccggtcacattcacttccattcattttttgacgttaaaaactgctcattacgctgcttgatgttgcaatttgatattttcttattatatcattatacttgctctgtgtagtcatgcaaacatttgtttgtagagcaagtagtttgaccattttctgccgtttattattcctagtcatttctcccataggcgactgaatcggaagttctaagacaatcgcgaaaacaggcgcacttccgcattttagaataaggtcaatagtgccACAAACAGGATGCTAATATCACCCAACCattccattttattaaggtgtatccatataattTCATATAACTTCATTGAttgttctttgttgtttttaacaAGACTATCAGtcagaaaacaatttaaaatcttGGCTCATTTAGCACTTAAAAGTAAAAGTATCTTACAGTTCtgaaaaaacaagacaaatactGAGGAAGATTTTGTTttcgtttttttctttttgcagtgaACTTTGCCATTTCAGTTACTGAACTGCTAGAAAGCAATCCACCATAAGAGATGAAGTTTATGCTAATCCAGTGCTTCAAATTCAATACTCAACTGCACATTTCAGAAAAATCAAATCTAATTGCAGTGCTAGAAATGTTTGCATTTACAGAATGTTTTGGGATTAATTCTGCGCTGGAGACCACATTTTTGTAATATTCAATGAAACGGCTCAAAAAGGTTGACCAAATTCATTCAATTTAATCAATCTACAAACACACTTGAATGTTATCGACATTTTAGGGATTTTGTACATTTGTCATTTATTGCAAGCTTCactaatataattgtttaaatgtataaatatgatAGTTTAGAAATAAAAGCAAAAGGGTGGAAAAACAAGTTGGTTTAAGCCAAGTGATGGCGATTGGTAATAATCTCCAACTAACAGAAACAAAAAACTCAACGCCATTGAGTCCTGTGTGCAAATAAAGATGACTCATATGTGAAATAGCCAATTTCCATGGAAAGAGACGTTTGTGGTTCAAGTAGTCAATGTTTTGTTGAATGTTCACTAAGTTCAGAGTTTTAGTTCCTCTAGTCAGTGTCATTGGCGGTCTGTGACtgcttctttatatatattttttataatttccaGCGTCTTTGCTCTACCAAACCCATTTCAAACAACAGTAAGTGTTACAAATGATCAATCCATGTTGGTGTTCACGTTTTTCTGTCTATGTATTACTTTTGTCATTTCCccaattttttttccccttcataatgtcttttttttaaaaacagagaAAAAGAAATGACTTTTCCACATTGTTTCATGAAATGGGAAATGGTATTTGCACTTGAAATTTGTTTATGCTCATGTAAAATGTCTGGATTTTGTATTGTCTTTTTAAATGAAAGGAATTGGTGTAC

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045120 lncRNA downstream 304287 40996451 ~ 40999225 (-) False XLOC_022607
TCONS_00045119 lncRNA downstream 304287 40996451 ~ 40999225 (-) True XLOC_022607
TCONS_00045118 lncRNA downstream 797399 40459952 ~ 40506113 (-) True XLOC_022594
TCONS_00044522 lncRNA downstream 797409 40459952 ~ 40506103 (-) False XLOC_022594
TCONS_00045117 lncRNA downstream 797421 40459952 ~ 40506091 (-) False XLOC_022594
TCONS_00045122 lncRNA upstream 307724 41612769 ~ 41618019 (-) True XLOC_022612
TCONS_00044755 lncRNA upstream 352135 41657180 ~ 41659516 (-) True XLOC_022614
TCONS_00045123 lncRNA upstream 550094 41855139 ~ 41857255 (-) False XLOC_022617
TCONS_00045124 lncRNA upstream 550094 41855139 ~ 41857279 (-) False XLOC_022617
TCONS_00045126 lncRNA upstream 550094 41855139 ~ 41857293 (-) False XLOC_022617
TCONS_00044539 mRNA downstream 408344 40872688 ~ 40895168 (-) True XLOC_022606
TCONS_00044538 mRNA downstream 485720 40815374 ~ 40817792 (-) True XLOC_022605
TCONS_00044537 mRNA downstream 489432 40813350 ~ 40814080 (-) True XLOC_022604
TCONS_00044536 mRNA downstream 491393 40810286 ~ 40812119 (-) True XLOC_022603
TCONS_00044535 mRNA downstream 506520 40792319 ~ 40796992 (-) True XLOC_022602
TCONS_00044541 mRNA upstream 8039 41313084 ~ 41585776 (-) True XLOC_022610
TCONS_00044543 mRNA upstream 324458 41629503 ~ 41651759 (-) True XLOC_022613
TCONS_00044544 mRNA upstream 434676 41739721 ~ 41762956 (-) False XLOC_022615
TCONS_00044545 mRNA upstream 448871 41753916 ~ 41762797 (-) False XLOC_022615
TCONS_00044547 mRNA upstream 495361 41800406 ~ 41821825 (-) False XLOC_022616
TCONS_00044540 other downstream 16063 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044527 other downstream 710578 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044525 other downstream 767472 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044516 other downstream 1351106 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044515 other downstream 1357934 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044542 other upstream 40699 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044546 other upstream 449445 41754490 ~ 41762926 (-) True XLOC_022615
TCONS_00044552 other upstream 1098519 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044554 other upstream 1203689 42508734 ~ 42515002 (-) True XLOC_022624
TCONS_00044558 other upstream 1531080 42836125 ~ 42876485 (-) False XLOC_022629

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU439485 True 979 lncRNA 0.33 2 CI01000192 119718 ~ 195455 (-)
rainbow trout (Oncorhynchus mykiss) TU439485 True 313 lncRNA 0.45 1 NC_048569.1 29389051 ~ 29389363 (+)
eurasian perch (Perca fluviatilis) TU66442 True 1078 lncRNA 0.37 1 NC_053116.1 14402710 ~ 14403787 (-)
bowfin (Amia calva) AMCG00013786 True 6794 mRNA 0.46 22 CM030125.1 42893266 ~ 42936143 (+)