RNA id: TCONS_00044541


Basic Information

Item Value
RNA id TCONS_00044541
length 3259
RNA type mRNA
GC content 0.52
exon number 22
gene id XLOC_022610
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 41313084 ~ 41585776 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAGTGCTCAAGTCGACCGTGTTTCTCCTCCTGTTCTCCGCGCACTCAGTCTCCGCAAAACCAACAAATAAAGCACTCTCTCTCGCTCGCGAACACCCGGGAATACCGCACATCCACGTCTGGACTCAAGACTCTCTCAGTTTGCCCTCTTTTAAAAACCTCCTCGCCAGTCTCACTGAAGATTcaaggtgttttttgtgttttgcgATGATGTTCATGCATGTTCTGATGCGCGCTGGTTTTGGATTATTCAGCGTCGCTCTGGTCGCCTTTGTCCAGGGTCCAGCCGGTGTTTTTGCCAGCAGAAACCCGCAAGATGTGGACGAGTGCGCCGAGGCCCTGGACAGCTGCAGTATAGATGCCATCTGTCAGAACACCCTCAAGTCATACAAATGCATCTGCAAATCAGGATACAAAGGCGACGGGAAACACTGTGAAGACATCGATGAGTGTGCCAGCGAATATAATGGAGGATGTGTTCACGAGTGCATCAACATCCCTGGAAACTACAGATGCACGTGTTATGACGGCTTCCGTCTGGCCCACGACGGACACAACTGCTTGGATGTGGATGAATGTGCTGAAGGAAACGGCGGCTGTCAGCAGATCTGTGTTAACATGATGGGCAGTTATGAATGTCGCTGCAGAGACGGCTTTCTGCTGTCCGACAACCAGCACACCTGCATCCAGAGGCCCAAAGTACGTTTCAATGGGACTAAGGATGTGGCCACCTGCATGGATAAAAATCACGGCTGTGCCCATATTTGCCGTGAGACCCCTAAAGGAACCATCGCCTGTGAATGCAGACCAGGATTTCAGCTCACCAAGAACAATCGAGACTGTAAATTGACCTGTAACTATGGTAATGGCGGCTGTCAGCACATCTGTGAGGAAACGGATCATGGGCCCAAATGCTCGTGTCACATGAAGTTTGCTCTTCACTCAGATGGAAAGACCTGTGTAGAGACGTGTGCAGTGAATAACGGTGGTTGTGACAGCACGTGTCATGATGCTGTGACTGGTGTTCGCTGCAGCTGCCCGGTGGGATTCACTTTACAGCCCGACCGCAAGACCTGCAAAGACATTGATGAATGTCGCATGAACAACGGTGGCTGTGATCACGTTTGCAGAAACACCGTCGGCAGCTTCGAGTGCAGCTGCAAGAAAGGATACAAACTCCTGACCAATGAGAGGACGTGCCAAGATATAGACGAGTGTTCGTTTGACCGGGCCTGTGACCACACATGCATAAATTCACCCGGGAGTTTCCAATGCTACTGTCATAAAGGCTACGTCCTCTACGGCGTGGCTCACTGCGGAGATATCGACGAGTGCAGCATTAATCAGGGTGGCTGTAAATCGGGCTGTCTTAACACGCTGGGCAGTTATGAATGTACCTGTCCTCCTGGATACAAACTGCACTGGAACAAGAAGGACTGTGTGGAGCTCATAAAATGTGCCTCCAATTTGGTGGCCCCCAAAGCCACCCTGGCCTGCAGTAAAACGGGCAAGAAAGAGAGCTGTTCCCTCACGTGTGCATCCAAAGCACATTATCTGTCAGAATCAGACAGCAGTTATTCTGTCAGCTGTGGAATATCAATCCTGCGAGGAAAATCTCAGAGCAGAGTCAACACGAGCAGCATCCAGAGCTGCATAGAGACTCAGGTTCATCCAGTGAAGCAAACGGCGTCTTTTCGGATCAAGAACGCCAAATGTCACCTGCACCCGAAGCATAAGGGGAGAGCAGAGGACAACGGCAGACAGATCGGCCCagGCGGTCAGCCGTGCAACAACTGCCTGGTCACGTTTGTTAACCTGAAGTGTGACTCCTCTAAGAAGACCAAAGGCGGTCGTCGAGCTCGAAACCCGACAAATAAAGAGGTGACGCGCATTACTCTGGAGCTGGAGGCCGAGGTCAAACCGGGAGACGCAACCgGGAACTGCAACATGATGTGTCAACGGCAGCACATGGAGCAGCAGATGAAGACGTACATTAAAACCCTGAAGAAGTCCATTAACCAGGAGCGTTTCCTGCTGCGTGTCGCTGGACTGGAGTATGAGGTGGCACAGAAGCTCACACAGACAGCGTTGAAGCAGGAGAACTGCGGACCGGGCCGAGAAAAGGACAGCGGACGTTGTGTCAGATGTTTGCCTGGCTCATATTACCATGGGGAGCAGGAGCGATGCATCCAGTGCCCACCGGGAACCTTCCAGGAGCGGGAAGGTCAGCTTGCCTGCGATCTGTGTCCTGGAGGAGACCGGCATGGCCCACAAGGAGCCCGCAACATCACGTCATGTGCAGGTCAGTGTCCACCAGGGCATTTCTCCAGCGACGGGTTCAAGCCCTGTCAGCCGTGTCCATTGGGAAAATACCAGCCAGATCCAGGACGGACCCTCTGTTTCTCCTGTGGAGGTGGACTCAGTACTAAAAGAGAGGGCGCCAGTTCATTCAATGACTGCGAGGTCAAAGtgttgtGTTCTCCAGGTCATTATTATAACACATCAGTTCATCGGTGTATCCGCTGTCCTCATGGAACCTACCAGGCTGAATTCAGACAGAACTACTGCATCTCCTGTCCTGGAAACACCACCACAGACTTTGACGGAGCCATCAGTGTGTCTCAGTGCAAGAATCGCGAATGCGGGGGTGAAATCGGCGAGTTCATTGGATACATCGAGTCACCCAACTATCCCGGAAACTACCCAGCCAATGTGGAGTGTGTGTGGACCATCAACCCTCCACACAAACGCAAGATTCTGATTGTGGTTCCTGAGATCTTCCTCCCGTCTGAGGATGAGTGTGGAGATGTGCTGGTCATGAGGAAGAACTGGTCTGCAACCTCTATTACCACCTATGAGACGTGTCAGACATACGAGAGACCGATTGCATTTACAGCCCGATCGAGGCGCCTCTGGATCAACTTCAAATCCAATGATGTGAACAGCGCTCGTGGTTTCCAGATTCCATACGTCACTTATGATGAAGACTATGAGCAGCTGGTTGAAGATATCGTAAGAGACGGACGGCTTTATGCCTCTGAAAACCATCAAGAAATACTCAAGGataaaaaactgattaaaacacTGTTCGACGTTCTGGCTCACCCTCACAATTACTACAAGTACTCGACTCGAGACTCCACGGAGATGCTCCCGCGCTCCTTCATTCGCCTCATCCACAGCAAAGTCTCGGCCTTCCTACGTCCGTACAATTAATCCAAAAAGACCACCATCCACCTCCACACAGGCCTCGAGTCAA

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0048747 muscle fiber development biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005615 extracellular space cellular_component
GO:0009986 cell surface cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060717-1 Predicted to enable calcium ion binding activity. Acts upstream of or within skeletal muscle fiber development and smoothened signaling pathway. Predicted to be active in cell surface and extracellular space. Is expressed in several structures, including blastomere; central nervous system; optic cup; segmental plate; and solid lens vesicle. Orthologous to human SCUBE3 (signal peptide, CUB domain and EGF like domain containing 3).

Ensembl:

ensembl_id ENSDART00000188689

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045121 lncRNA downstream 8039 41303512 ~ 41305045 (-) True XLOC_022609
TCONS_00045120 lncRNA downstream 313859 40996451 ~ 40999225 (-) False XLOC_022607
TCONS_00045119 lncRNA downstream 313859 40996451 ~ 40999225 (-) True XLOC_022607
TCONS_00045118 lncRNA downstream 806971 40459952 ~ 40506113 (-) True XLOC_022594
TCONS_00044522 lncRNA downstream 806981 40459952 ~ 40506103 (-) False XLOC_022594
TCONS_00045122 lncRNA upstream 26993 41612769 ~ 41618019 (-) True XLOC_022612
TCONS_00044755 lncRNA upstream 71404 41657180 ~ 41659516 (-) True XLOC_022614
TCONS_00045123 lncRNA upstream 269363 41855139 ~ 41857255 (-) False XLOC_022617
TCONS_00045124 lncRNA upstream 269363 41855139 ~ 41857279 (-) False XLOC_022617
TCONS_00045126 lncRNA upstream 269363 41855139 ~ 41857293 (-) False XLOC_022617
TCONS_00044539 mRNA downstream 417916 40872688 ~ 40895168 (-) True XLOC_022606
TCONS_00044538 mRNA downstream 495292 40815374 ~ 40817792 (-) True XLOC_022605
TCONS_00044537 mRNA downstream 499004 40813350 ~ 40814080 (-) True XLOC_022604
TCONS_00044536 mRNA downstream 500965 40810286 ~ 40812119 (-) True XLOC_022603
TCONS_00044535 mRNA downstream 516092 40792319 ~ 40796992 (-) True XLOC_022602
TCONS_00044543 mRNA upstream 43727 41629503 ~ 41651759 (-) True XLOC_022613
TCONS_00044544 mRNA upstream 153945 41739721 ~ 41762956 (-) False XLOC_022615
TCONS_00044545 mRNA upstream 168140 41753916 ~ 41762797 (-) False XLOC_022615
TCONS_00044547 mRNA upstream 214630 41800406 ~ 41821825 (-) False XLOC_022616
TCONS_00044548 mRNA upstream 219131 41804907 ~ 41824460 (-) True XLOC_022616
TCONS_00044540 other downstream 25635 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044527 other downstream 720150 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044525 other downstream 777044 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044516 other downstream 1360678 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044515 other downstream 1367506 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044546 other upstream 168714 41754490 ~ 41762926 (-) True XLOC_022615
TCONS_00044552 other upstream 817788 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044554 other upstream 922958 42508734 ~ 42515002 (-) True XLOC_022624
TCONS_00044558 other upstream 1250349 42836125 ~ 42876485 (-) False XLOC_022629
TCONS_00044564 other upstream 1435418 43021194 ~ 43125946 (-) True XLOC_022631

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000192_00124135_00167418.mRNA True 3486 mRNA 0.51 19 CI01000192 123577 ~ 167829 (-)