RNA id: TCONS_00044543


Basic Information

Item Value
RNA id TCONS_00044543
length 491
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_022613
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 41629503 ~ 41651759 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACAGGTGAACGACTGCAATTCCTGTCAAACAGattggTTCCATCGTTAAACAAAGCTTTTTTGAAGACCCTCGTCAGCAATTGACTCTTCAAATGTGCGATGCCCAAAAGTGACACCTGGCCAGGGGGCATTTCCATTGAATCTGTGTCTGGAATGGACAGTGCCGGAAGCTGTGATAGTGTGCATAGCATCACCTCTGGATTTAGTGATGGCAGTCTGGAGCACCTTTCCGCGGAGGAGAAAGCCTGCTTGATGTTTCTGGAGGAGACCATTGAGTCTTTGGAGGCAGAATATGACAGCGGTTTGTCAAACGATGAGCCTGATTGTCCATCCAATGGCCTGAAAGAAAACATTGCTCATCCGACCTCCATCAGTCAGAACAAATCTCAGGAGTTCTCTACCCTCGAAGGTCAAGTCAAAGTGATTGGAAAAGATGGTAAACCTCCTCAGAAGTACCTTGTGCCAACCCCATTGCTCCTTGCCAGTGGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000146808

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045122 lncRNA downstream 11484 41612769 ~ 41618019 (-) True XLOC_022612
TCONS_00045121 lncRNA downstream 324458 41303512 ~ 41305045 (-) True XLOC_022609
TCONS_00045120 lncRNA downstream 630278 40996451 ~ 40999225 (-) False XLOC_022607
TCONS_00045119 lncRNA downstream 630278 40996451 ~ 40999225 (-) True XLOC_022607
TCONS_00045118 lncRNA downstream 1123390 40459952 ~ 40506113 (-) True XLOC_022594
TCONS_00044755 lncRNA upstream 5421 41657180 ~ 41659516 (-) True XLOC_022614
TCONS_00045123 lncRNA upstream 203380 41855139 ~ 41857255 (-) False XLOC_022617
TCONS_00045124 lncRNA upstream 203380 41855139 ~ 41857279 (-) False XLOC_022617
TCONS_00045126 lncRNA upstream 203380 41855139 ~ 41857293 (-) False XLOC_022617
TCONS_00045125 lncRNA upstream 203380 41855139 ~ 41857293 (-) False XLOC_022617
TCONS_00044541 mRNA downstream 43727 41313084 ~ 41585776 (-) True XLOC_022610
TCONS_00044539 mRNA downstream 734335 40872688 ~ 40895168 (-) True XLOC_022606
TCONS_00044538 mRNA downstream 811711 40815374 ~ 40817792 (-) True XLOC_022605
TCONS_00044537 mRNA downstream 815423 40813350 ~ 40814080 (-) True XLOC_022604
TCONS_00044536 mRNA downstream 817384 40810286 ~ 40812119 (-) True XLOC_022603
TCONS_00044544 mRNA upstream 87962 41739721 ~ 41762956 (-) False XLOC_022615
TCONS_00044545 mRNA upstream 102157 41753916 ~ 41762797 (-) False XLOC_022615
TCONS_00044547 mRNA upstream 148647 41800406 ~ 41821825 (-) False XLOC_022616
TCONS_00044548 mRNA upstream 153148 41804907 ~ 41824460 (-) True XLOC_022616
TCONS_00044549 mRNA upstream 297816 41949575 ~ 42093537 (-) False XLOC_022619
TCONS_00044542 other downstream 283645 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044540 other downstream 342054 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044527 other downstream 1036569 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044525 other downstream 1093463 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044516 other downstream 1677097 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044546 other upstream 102731 41754490 ~ 41762926 (-) True XLOC_022615
TCONS_00044552 other upstream 751805 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044554 other upstream 856975 42508734 ~ 42515002 (-) True XLOC_022624
TCONS_00044558 other upstream 1184366 42836125 ~ 42876485 (-) False XLOC_022629
TCONS_00044564 other upstream 1369435 43021194 ~ 43125946 (-) True XLOC_022631

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000192_00252038_00254509.mRNA True 3370 mRNA 0.42 3 CI01000192 250552 ~ 254509 (-)