RNA id: TCONS_00044755


Basic Information

Item Value
RNA id TCONS_00044755
length 856
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_022614
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 41657180 ~ 41659516 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCAGTtccagatgtgtaatctctggaGGCCCTCACTGATTTCAGCAGCCGTCCGTCCTGCCCTGATGTCCCAGACTCACGCCCTTCATCAAAACTGCACAACCACCAGAGAAACCTTCAATTCCACTCAGATTCTCATCAAAACAAGATGTCGCTATTGGACTCATGGACCGAAGGAAAATGCTTTAATGGACAGTTCATCTACTCATTCATGACAAATTCTCCATTTTATTAATCTTTAAGAGcttttttcttctgatgaacacaaaggattgcattatgaattttttttactgatgtaattttttttaaacttagatTACTCTAATCATAaggggttacactttattttaaaggagacctaatatgcaaaaatcatttttataaggGGTGTAAACACAGTTGTATGGCAACAGTGTGTGGATATAATCAGCCTCTAATGGTACAAATCTATtcattttactctttactccaaTCTCACTTGATAACAGTCTGCAgacacactttgattgacattttccctttgtacaTGGCATCAAAAAGGGAAAACCCCGCCCATTGGTGAgaatctcttcctcattagcatacaTCATTAGTCTTGTTTCTGAGtctgccattatgctgacacacaggcatttgtagcctcaccctctttttaaaagagtacaatctcatttgaatttaaagcggcagtcaccaaaacagcacaatttgaaTCAAGACACAAAAGTGTCAGTTTCAAAtagtttaaaacattatttgtgttgaagtgttgtcacgatactgaaatcCAATACCAATcggaactctttggagtgaatgccaggaaTTAAGTTTGGCAGCGCTCATCTCCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045122 lncRNA downstream 39161 41612769 ~ 41618019 (-) True XLOC_022612
TCONS_00045121 lncRNA downstream 352135 41303512 ~ 41305045 (-) True XLOC_022609
TCONS_00045120 lncRNA downstream 657955 40996451 ~ 40999225 (-) False XLOC_022607
TCONS_00045119 lncRNA downstream 657955 40996451 ~ 40999225 (-) True XLOC_022607
TCONS_00045118 lncRNA downstream 1151067 40459952 ~ 40506113 (-) True XLOC_022594
TCONS_00045123 lncRNA upstream 195623 41855139 ~ 41857255 (-) False XLOC_022617
TCONS_00045124 lncRNA upstream 195623 41855139 ~ 41857279 (-) False XLOC_022617
TCONS_00045126 lncRNA upstream 195623 41855139 ~ 41857293 (-) False XLOC_022617
TCONS_00045125 lncRNA upstream 195623 41855139 ~ 41857293 (-) False XLOC_022617
TCONS_00045127 lncRNA upstream 195623 41855139 ~ 41857295 (-) False XLOC_022617
TCONS_00044543 mRNA downstream 5421 41629503 ~ 41651759 (-) True XLOC_022613
TCONS_00044541 mRNA downstream 71404 41313084 ~ 41585776 (-) True XLOC_022610
TCONS_00044539 mRNA downstream 762012 40872688 ~ 40895168 (-) True XLOC_022606
TCONS_00044538 mRNA downstream 839388 40815374 ~ 40817792 (-) True XLOC_022605
TCONS_00044537 mRNA downstream 843100 40813350 ~ 40814080 (-) True XLOC_022604
TCONS_00044544 mRNA upstream 80205 41739721 ~ 41762956 (-) False XLOC_022615
TCONS_00044545 mRNA upstream 94400 41753916 ~ 41762797 (-) False XLOC_022615
TCONS_00044547 mRNA upstream 140890 41800406 ~ 41821825 (-) False XLOC_022616
TCONS_00044548 mRNA upstream 145391 41804907 ~ 41824460 (-) True XLOC_022616
TCONS_00044549 mRNA upstream 290059 41949575 ~ 42093537 (-) False XLOC_022619
TCONS_00044542 other downstream 311322 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044540 other downstream 369731 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044527 other downstream 1064246 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044525 other downstream 1121140 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044516 other downstream 1704774 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044546 other upstream 94974 41754490 ~ 41762926 (-) True XLOC_022615
TCONS_00044552 other upstream 744048 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044554 other upstream 849218 42508734 ~ 42515002 (-) True XLOC_022624
TCONS_00044558 other upstream 1176609 42836125 ~ 42876485 (-) False XLOC_022629
TCONS_00044564 other upstream 1361678 43021194 ~ 43125946 (-) True XLOC_022631

Expression Profile

//