RNA id: TCONS_00044546


Basic Information

Item Value
RNA id TCONS_00044546
length 733
RNA type nonsense_mediated_decay
GC content 0.51
exon number 3
gene id XLOC_022615
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 41739721 ~ 41762956 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAGTGAcaaaaaacaccaaaacaaactAATCGATTTGACTTTCCGCAACTCTCATTCAGAGACGTTATGAAAAACAGGATTATTGCCCCGAAACATATGCTGTCAACGCAAGGGGTAATAATAAACTCATGGAGCTGCGGAGAGTAACGAGCCTCCGGCGGGGCTGCAAAAGAGCCAAGCCGCCCAGCGCGATCATGTGGCGGGATAGTAAAGTTCTGCGCCCGCTGCCCGTGGAGACCAATAATGATGAGGAACCCATGGAGGAAGACGACTTTTTCTCCTTGGGGTTCCTCAAGAAGGACAATTTCGAGGCTGGGATAGTCTTCACAGCGCCTCGGTATAGTTTAATTCGGGAAGTGGGTCGCGGGAGCTACGGCGTGGTTTACGAGGCCGTCGCCCGGAGTTCTGGGCCCTGGCGAGCCTGGAGAAAAGGCACGAAAATGTGGTGCAACTGGAGGAGTGTGTCCTGCAGAGAAACGGGATGGCACAGAAGATGAGCCACGGGAACAAACGAAACAAGCAGTATTTGAGATTAGTGGAAACGTCGTTGAAAGGTGAGCGTATCCTGGGTTACCCAGAGGAACCTTGTTATCTTTGGTTTGTTATGGAGTTCTGCGATGGCGGTGACCTTAATCAGTACATCCTCTCACGACGGCCCGATCCACGGACCAACCGAAGCTTCATGAAACAATTAACCAGTGCTGTGGCCTTCCTCCATAAAAACAACATCG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0051321 meiotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-061103-553 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in meiotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Is expressed in solid lens vesicle. Orthologous to human STK35 (serine/threonine kinase 35).

Ensembl:

ensembl_id ENSDART00000143882

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044755 lncRNA downstream 94974 41657180 ~ 41659516 (-) True XLOC_022614
TCONS_00045122 lncRNA downstream 136471 41612769 ~ 41618019 (-) True XLOC_022612
TCONS_00045121 lncRNA downstream 449445 41303512 ~ 41305045 (-) True XLOC_022609
TCONS_00045120 lncRNA downstream 755265 40996451 ~ 40999225 (-) False XLOC_022607
TCONS_00045119 lncRNA downstream 755265 40996451 ~ 40999225 (-) True XLOC_022607
TCONS_00045123 lncRNA upstream 92213 41855139 ~ 41857255 (-) False XLOC_022617
TCONS_00045124 lncRNA upstream 92213 41855139 ~ 41857279 (-) False XLOC_022617
TCONS_00045126 lncRNA upstream 92213 41855139 ~ 41857293 (-) False XLOC_022617
TCONS_00045125 lncRNA upstream 92213 41855139 ~ 41857293 (-) False XLOC_022617
TCONS_00045127 lncRNA upstream 92213 41855139 ~ 41857295 (-) False XLOC_022617
TCONS_00044543 mRNA downstream 102731 41629503 ~ 41651759 (-) True XLOC_022613
TCONS_00044541 mRNA downstream 168714 41313084 ~ 41585776 (-) True XLOC_022610
TCONS_00044539 mRNA downstream 859322 40872688 ~ 40895168 (-) True XLOC_022606
TCONS_00044538 mRNA downstream 936698 40815374 ~ 40817792 (-) True XLOC_022605
TCONS_00044537 mRNA downstream 940410 40813350 ~ 40814080 (-) True XLOC_022604
TCONS_00044547 mRNA upstream 37480 41800406 ~ 41821825 (-) False XLOC_022616
TCONS_00044548 mRNA upstream 41981 41804907 ~ 41824460 (-) True XLOC_022616
TCONS_00044549 mRNA upstream 186649 41949575 ~ 42093537 (-) False XLOC_022619
TCONS_00044550 mRNA upstream 186650 41949576 ~ 41965557 (-) True XLOC_022619
TCONS_00044551 mRNA upstream 456687 42219613 ~ 42232124 (-) True XLOC_022620
TCONS_00044542 other downstream 408632 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044540 other downstream 467041 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044527 other downstream 1161556 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044525 other downstream 1218450 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044516 other downstream 1802084 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044552 other upstream 640638 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044554 other upstream 745808 42508734 ~ 42515002 (-) True XLOC_022624
TCONS_00044558 other upstream 1073199 42836125 ~ 42876485 (-) False XLOC_022629
TCONS_00044564 other upstream 1258268 43021194 ~ 43125946 (-) True XLOC_022631
TCONS_00044573 other upstream 1767675 43530601 ~ 43530715 (-) True XLOC_022637

Expression Profile

//