RNA id: TCONS_00045127


Basic Information

Item Value
RNA id TCONS_00045127
length 1597
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_022617
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 41855139 ~ 41857539 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GgaggaactgaaaaaaaaaatcccattttAATGTGAAAAATCAGGTTTATTTAGTACAAAAGTGTTTGAGCATGACAGACAAGAGAGGGAGACACACACATGTAATGATGCTCCAATAATACCTGTAGGACACTATAAATATATCCATGCACATATTTAATGGAGATATATTTATAATTGGTGCCATTTCATCAAGACAGTGTAATCGAATAAGCCTAAAGCGATTATAAAGATGAAAGAGAACAAATCTCATGACTGTCAGATATTTTAACAAGGCATTCATCTTTCTTTGTTAGccttattcaaacacacacttcagGCACTTTCAAAGCAAACCCACACTGTTTTAAACCCCACAGCAAAATATTTGTAAGACAGTCATCAAAATACACCtttgtttattgtgaatacaCTCCCTCTAGTGGAGAGAACGGTGTactgtgactttaaaacaacagtcAAATTAGTTATTTTTGACTTGACTCAAAAGAGAGCAATAAACTCAAGACCGAGGGGCTTTTAGCATCTTATTTTGATCAGACTTTCAACATCTGTGaaggaactgaaaaaaaaaaaaacatcccattttAATGCGAAAGATCAGGTTTATTTAGTACAAAAGTGTTTTAGCATGACAGGCATGAGAGGGAGACACACACATGAAAAGATGCTCTAATAATACCTGTAGGACACTATAAATATATCCATGCACTTATTTAATggagatatatatttatacactccCTCTAGTGGAGAGAATGGTTTACTGAATCTTTAAAACAACAATCAAATTAGTGATTTTTGAAGTGACTAAAAAGAGAGCAATAAACTCAAGACTGAGGGGCTTTTAGCATATTATTTTGATCAGACTGTTGCCATTTgtgaagaaactgaaaaaaaaaacccatcccATTTTAATGCGAAAGATCAGTTTATTTAGTACAAAAGTGTTTCAGCATGAAAGACATGATACCTGTAGGACACTATAAATATATCCATGCACTCATTTGAtggatatatatttataattggtGCCGTTTCATCAAGAGTATAGATGAATAAGCCTGGAGCGTCTCTAAAGATGAAAGAAAACTAATCTCAAGGCTGTAAAAGATGTTAACAAGGCATCTATCTATCAAAGCCACAAATCAAACTGCAAGTAAAAATGTGTGTGGCTTTCTTGAttagtattttgttgttgttttcttgtaCAAACCTTTTAATGTCTTTTTAAACGTCATGTTTTCTGATTAATCTCAAAACAAGATCAAACATTTATCAGAAGAGTTAGAAATATTGATTTGTTTGCCTTTTTAATTTAGTGTTACGccacttttatttttgctaatcAAAGTTCTGATTAATTTTTAAGCTAGAAAACAAGACTTCAGTTTGCTTCTCAAGAAAACCTACACTGATTTGAGAATGTTTCTTGGTTTTTATTGGAAAACATAGCGAAATACTGATGAGCAGAATATTTGCTGTGTTTAGAGTCGTGTGTTAGCCTGattcaaacacacacttcagGCACTTTTTAAACACCACAAGAAAATATTTGGGGAAAACCAATCCACACATGCATACAACTGAAACAGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044755 lncRNA downstream 195623 41657180 ~ 41659516 (-) True XLOC_022614
TCONS_00045122 lncRNA downstream 237120 41612769 ~ 41618019 (-) True XLOC_022612
TCONS_00045121 lncRNA downstream 550094 41303512 ~ 41305045 (-) True XLOC_022609
TCONS_00045120 lncRNA downstream 855914 40996451 ~ 40999225 (-) False XLOC_022607
TCONS_00044756 lncRNA upstream 79709 41937004 ~ 41937979 (-) True XLOC_022618
TCONS_00044757 lncRNA upstream 474624 42331919 ~ 42334971 (-) False XLOC_022621
TCONS_00045130 lncRNA upstream 476026 42333321 ~ 42334991 (-) True XLOC_022621
TCONS_00045131 lncRNA upstream 504750 42362045 ~ 42414711 (-) False XLOC_022622
TCONS_00044553 lncRNA upstream 557040 42414335 ~ 42454539 (-) True XLOC_022622
TCONS_00044548 mRNA downstream 30679 41804907 ~ 41824460 (-) True XLOC_022616
TCONS_00044547 mRNA downstream 33314 41800406 ~ 41821825 (-) False XLOC_022616
TCONS_00044544 mRNA downstream 92183 41739721 ~ 41762956 (-) False XLOC_022615
TCONS_00044545 mRNA downstream 92342 41753916 ~ 41762797 (-) False XLOC_022615
TCONS_00044543 mRNA downstream 203380 41629503 ~ 41651759 (-) True XLOC_022613
TCONS_00044549 mRNA upstream 92280 41949575 ~ 42093537 (-) False XLOC_022619
TCONS_00044550 mRNA upstream 92281 41949576 ~ 41965557 (-) True XLOC_022619
TCONS_00044551 mRNA upstream 362318 42219613 ~ 42232124 (-) True XLOC_022620
TCONS_00044555 mRNA upstream 868866 42726161 ~ 42752550 (-) False XLOC_022626
TCONS_00044556 mRNA upstream 879504 42736799 ~ 42752387 (-) True XLOC_022626
TCONS_00044546 other downstream 92213 41754490 ~ 41762926 (-) True XLOC_022615
TCONS_00044542 other downstream 509281 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044540 other downstream 567690 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044527 other downstream 1262205 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044525 other downstream 1319099 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044552 other upstream 546269 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044554 other upstream 651439 42508734 ~ 42515002 (-) True XLOC_022624
TCONS_00044558 other upstream 978830 42836125 ~ 42876485 (-) False XLOC_022629
TCONS_00044564 other upstream 1163899 43021194 ~ 43125946 (-) True XLOC_022631
TCONS_00044573 other upstream 1673306 43530601 ~ 43530715 (-) True XLOC_022637