RNA id: TCONS_00044549


Basic Information

Item Value
RNA id TCONS_00044549
length 1783
RNA type mRNA
GC content 0.53
exon number 11
gene id XLOC_022619
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 41949575 ~ 42093537 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTCACGATGGCCGTGGCGCTGGACGCAGTTTGGGTGCGAGTGAAGGGAGTCTGTAAGCAGAACGGCCTGCTGATCCTCTCGGTTTTGGCTGTGGTTATCGGATGTTTGCTCGGCTTCTTCTTGCGCTCCAAAAACCTCTCGGAGCAGGAAGTCAAGTACTTCCAGTTTCCCGGAGAGCTGCTGATGCGCATGTTGAAGATGCTGATTTTGCCTCTGGTTGTGTCTAGTTTGATGTCAGGTTTGGCGGCTCTGGATGCCAAGTGTTCCAGTCGTCTGGGTCTCATCACGGTCTCTTATTACCTGTGGACCACGTTTCTGGCGGTGGTGGTGGGAATCGTCATGGTGTTGATCATTCATCCGGGTGGAATGGCACAGAAAGAGGACTCGGAGGACAGCGGAAAACCCATCATGAGCTCTGCTGATGCCCTGCTGGATCTCATACGAAACATGTTTCCGGCAAACCTTGTCCAAGCCACATTTCAACAGTATCGTACCAACAGTGTGCCAATAATGAAGGCGCCCAAGACCACAGTGGCCACCAGCCTGGCAGAAAGCACCACACGCCGAGCTCTGATCTATGGCATTCAGGACGATAATGGGACGGACATCCAGAATTTCCAGCTGGATCTGACACCGCCACCGGACGTAGTGTTTCGGACTCTTCCTGGCACTAGCGAGGGCATGAACGTCCTGGGCATCGTCATCTTTTCTGCCACCATGGGTATAATGTTGGGCAGAATGGGTCCGAATGGCAGCGCTCTGGTTAACTTTTGCCAAAGTCTCAATGAAGCAGTGCTGAAAATTGTTGCTATCGTCATCTGGTACTTCCCGTTCGGCATCGTGTTTCTGGTGGCCGGTAAGATCCTGGAGATGAGTGATCCATCAGCGATGGGCAAGAAGCTGGGTTTCTATGCCATCACAGTGGTTATGGGACTCATCCTGCATGGCCTCTTCATCCTGCCCAGCATGTACTTCTTCATCACCAAGAAGAGTCCCATCGTCTACATCAGGGGAATCCTGCAGGCGCTGCTCATCTCACTGGCCACGTCCTCCagTTCTGCTACTCTGCCTATCACCTTCAAGTGCCTGCTGGAAAACAATCACATCGACCGACGGATCATTCGCTTCGTGCTGCCCGTCGGAGCCACCATCAACATGGACGGCACAGCGCTGTACGAGGCGGTGGCAGCCATCTTTATTGCCCAGGTCAACAACTACGAGCTAGACTTCGGCCAAATCATCACAATCAGTATTACAGCGACAGCCGCAAGCATCGGTGCAGCCGGGATCCCACAGGCTGGCCTGGTAACCATGGTAATAGTCTTGACATCCGTCGGACTGCCCACCGATGACATCACTCTCATTATCGCTGTCGATTGGGCCTTAGACAGATTTCGCACAATGGTCAACGTGATGGGAGACGCTCTGGCCACAGGAATCATGGCCCACATCTGCAGAAAAGACTTTATCAAAGAGGGAGACGGgGTCCCTCTTATTTGTGAAACGAAGCCCACGACTAACCCGGCATTGCCAAACTGTCAGCAGAACAATGGTAGTTTCCAGCCTCCGCCAGCAGGGGTCAAACCAGAGCACATCCCGCCGGATGTAGCCCGACTCATGCAGCTTGAGGAAGGGGTCCGTCTGCCACCTCCCGACCGGAAAAAACCACCCGTCCCACCACGACACCTGAAACACAGAGACAAGGACCATTGTGCCATTGACATGAACGGTCTTGAGACTAATGTATAGCACCACTGAATGCAAAAAAATTTACAGGACAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101111-7 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC1A7 (solute carrier family 1 member 7).

Ensembl:

ensembl_id ENSDART00000122074

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044756 lncRNA downstream 11596 41937004 ~ 41937979 (-) True XLOC_022618
TCONS_00045129 lncRNA downstream 92036 41855139 ~ 41857539 (-) True XLOC_022617
TCONS_00045128 lncRNA downstream 92231 41855139 ~ 41857344 (-) False XLOC_022617
TCONS_00045127 lncRNA downstream 92280 41855139 ~ 41857295 (-) False XLOC_022617
TCONS_00045126 lncRNA downstream 92282 41855139 ~ 41857293 (-) False XLOC_022617
TCONS_00044757 lncRNA upstream 238382 42331919 ~ 42334971 (-) False XLOC_022621
TCONS_00045130 lncRNA upstream 239784 42333321 ~ 42334991 (-) True XLOC_022621
TCONS_00045131 lncRNA upstream 268508 42362045 ~ 42414711 (-) False XLOC_022622
TCONS_00044553 lncRNA upstream 320798 42414335 ~ 42454539 (-) True XLOC_022622
TCONS_00045132 lncRNA upstream 528808 42622345 ~ 42627442 (-) True XLOC_022625
TCONS_00044548 mRNA downstream 125115 41804907 ~ 41824460 (-) True XLOC_022616
TCONS_00044547 mRNA downstream 127750 41800406 ~ 41821825 (-) False XLOC_022616
TCONS_00044544 mRNA downstream 186619 41739721 ~ 41762956 (-) False XLOC_022615
TCONS_00044545 mRNA downstream 186778 41753916 ~ 41762797 (-) False XLOC_022615
TCONS_00044543 mRNA downstream 297816 41629503 ~ 41651759 (-) True XLOC_022613
TCONS_00044551 mRNA upstream 126076 42219613 ~ 42232124 (-) True XLOC_022620
TCONS_00044555 mRNA upstream 632624 42726161 ~ 42752550 (-) False XLOC_022626
TCONS_00044556 mRNA upstream 643262 42736799 ~ 42752387 (-) True XLOC_022626
TCONS_00044557 mRNA upstream 672163 42765700 ~ 42810664 (-) True XLOC_022627
TCONS_00044559 mRNA upstream 742588 42836125 ~ 42876596 (-) False XLOC_022629
TCONS_00044546 other downstream 186649 41754490 ~ 41762926 (-) True XLOC_022615
TCONS_00044542 other downstream 603717 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044540 other downstream 662126 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044527 other downstream 1356641 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044525 other downstream 1413535 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044552 other upstream 310027 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044554 other upstream 415197 42508734 ~ 42515002 (-) True XLOC_022624
TCONS_00044558 other upstream 742588 42836125 ~ 42876485 (-) False XLOC_022629
TCONS_00044564 other upstream 927657 43021194 ~ 43125946 (-) True XLOC_022631
TCONS_00044573 other upstream 1437064 43530601 ~ 43530715 (-) True XLOC_022637

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000193_00289289_00334600.mRNA True 3849 mRNA 0.44 12 CI01000193 287342 ~ 334600 (-)