RNA id: TCONS_00044553


Basic Information

Item Value
RNA id TCONS_00044553
length 541
lncRNA type antisense
GC content 0.41
exon number 2
gene id XLOC_022622
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 42362045 ~ 42454539 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATCTTTTGAAGCCCATCGGGTTCTTCAATAAATGTGGTAAGTTTCCCACAAAAGGCAGAGGTGTTGGACCAGGTGGAAATCGACCTTTGTATGAATAAATCCTGAAGATCTCAAACAGAACCAGAAAAATTAAGCCCAGGAACAGAGTCAAGCCCACAGAGGCCAAGTCTAACTTCAGGAGAGCCGTAAACATGATGACCAGTTCAGTTCAGgacaaaacacaacagcagtATAGAATCAGGAGCTTTATAACAGCAGAAGAGGGAGGAGACAGAGAGAGATTGACCTGCTGTTAACGCCTTTCAGTCCTGTCTTCATCCTCTACCCAAACAGAGCCCCGCATCTTATGAATAAAATCTGTTGATTTGCAAAAAATTACCTAAAAGTACCTGATTTGACATGATACTTACGAAAGTAGTTTGTTTGATTCACACTGCCTGGAAAATTATTGGTGTATCAGAGCTGATGTCACTGCAGGATATGTATGAACAGGACGCATTAAGATGTGCTAAACAAATAGCTTGTGACGTATCACATTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000163854

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045130 lncRNA downstream 79344 42333321 ~ 42334991 (-) True XLOC_022621
TCONS_00044757 lncRNA downstream 79364 42331919 ~ 42334971 (-) False XLOC_022621
TCONS_00044756 lncRNA downstream 476356 41937004 ~ 41937979 (-) True XLOC_022618
TCONS_00045129 lncRNA downstream 556796 41855139 ~ 41857539 (-) True XLOC_022617
TCONS_00045128 lncRNA downstream 556991 41855139 ~ 41857344 (-) False XLOC_022617
TCONS_00045132 lncRNA upstream 167806 42622345 ~ 42627442 (-) True XLOC_022625
TCONS_00045133 lncRNA upstream 374094 42828633 ~ 42831162 (-) True XLOC_022628
TCONS_00044561 lncRNA upstream 430064 42884603 ~ 42897815 (-) False XLOC_022630
TCONS_00044562 lncRNA upstream 439596 42894135 ~ 42902381 (-) False XLOC_022630
TCONS_00044563 lncRNA upstream 446397 42900936 ~ 42906528 (-) True XLOC_022630
TCONS_00044551 mRNA downstream 182211 42219613 ~ 42232124 (-) True XLOC_022620
TCONS_00044549 mRNA downstream 320798 41949575 ~ 42093537 (-) False XLOC_022619
TCONS_00044550 mRNA downstream 448778 41949576 ~ 41965557 (-) True XLOC_022619
TCONS_00044548 mRNA downstream 589875 41804907 ~ 41824460 (-) True XLOC_022616
TCONS_00044547 mRNA downstream 592510 41800406 ~ 41821825 (-) False XLOC_022616
TCONS_00044555 mRNA upstream 271622 42726161 ~ 42752550 (-) False XLOC_022626
TCONS_00044556 mRNA upstream 282260 42736799 ~ 42752387 (-) True XLOC_022626
TCONS_00044557 mRNA upstream 311161 42765700 ~ 42810664 (-) True XLOC_022627
TCONS_00044559 mRNA upstream 381586 42836125 ~ 42876596 (-) False XLOC_022629
TCONS_00044560 mRNA upstream 381586 42836125 ~ 42883522 (-) True XLOC_022629
TCONS_00044552 other downstream 10655 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044546 other downstream 651409 41754490 ~ 41762926 (-) True XLOC_022615
TCONS_00044542 other downstream 1068477 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044540 other downstream 1126886 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044527 other downstream 1821401 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044554 other upstream 54195 42508734 ~ 42515002 (-) True XLOC_022624
TCONS_00044558 other upstream 381586 42836125 ~ 42876485 (-) False XLOC_022629
TCONS_00044564 other upstream 566655 43021194 ~ 43125946 (-) True XLOC_022631
TCONS_00044573 other upstream 1076062 43530601 ~ 43530715 (-) True XLOC_022637
TCONS_00044578 other upstream 1555886 44010425 ~ 44010541 (-) True XLOC_022645

Expression Profile

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