RNA id: TCONS_00045133


Basic Information

Item Value
RNA id TCONS_00045133
length 1704
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_022628
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 42828633 ~ 42831162 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCTGAACAcagatgattcagttattcatccTGAATGACTCCTGAACAcagatgattcagttattcatccAGGATGACTCCTAAAcacaaatgattcagttattcattatGATGACTCCTGAACACAGAGGATTCAGTTATTCATTATGAATGACTCCTGAACACAGATGATTCAGCTCTTCATCTTGAATGTGTCCTAAACACGGATGATTCAGTTGTTTATCATAAATGACTCCTAAGCACGGATGATTCAGTTATTCTTCCATAATGACTCTTGAGCACATATGATTCAATTATTCTTCCTGAACACAGATGATTCAGTTATTTGTCCTGAATGACTCCTGAACACAGATGATTTAGTTATTCATTATGAATAACTCCTGAACACAGACGATTCAGCTCTTCATCTTGAATGTGTCCTAAACACGGATGATTCAGTTGTTTATCATAAATGACTCCTTAACACAACTGATTCAGTTATTCGTCCTGAACAcagatgattcagttattcattatGGATGACTCCTGAACACAGAGGATTTAGTTATTCATTATGAATGACTCCTAAACACAGATGATCCAGTTATTCATTATGATGAATTCTGAACACAGATGAATCAGTTACTCATCCTGAATGACTCCTGATTGCAGATGATTCTGTTATTCATCCAGGATGACTCCTAAACACAAATGATTTAGTTATTCATTATGAATGACTTTGAACACAGATGATTCTGTTGAGGGAGTCGATTTAAAAATAATCTGTTCATTGACTTCGTAGTGGATTGAAACACTTTGGTTTGAAAGTAGTAGtactttatttaaatagtgtttttCTTTCTGAAATGTACTCTATAATCATTTGCAACTTCAAAAAGTACTAATCAATCTATAAAcaaattatgtgtgtgtgcgaatgattGGACGAATTTCTGGACCAATCACAGCTCGGCTTGTTTTTACCATGATTGACTTGAGCAATAAAGTAGCATCGTCTTGTTTCAGTTGGTTAACGTTTGCTTTCCATCCTCAGTGTATCTCCACCTTCCTCATTTAATGTCGTTTGTTCGTCCATTTCCTGACCCGCTTCTCTTACAGAAACTGATCCTCAGCACAAACCTCTGAACTCTGCATGTCAGCAATATCAGAGTGGTAAACCCTGCCCGTTTCTGCCCATCATTTGCTTCTGACTGAATATCAATGAACTCGAACCCATGGAATCTTAATAGGGCTACACTGGACCGAACACATTATAAATGGACGTTAAACGGACATCTCGCCTGCCTTTTCTATGTTTTGATTTCTTATTCCTTGTATTGTTTCACAGGTGATGCCTCGGATGTTATTGCAGGAGTGTTGTTGAAGTGTGTGTGAAGGTAAAGGACTCGGATGTAATGTATTTCTCATTGTAATGTTGATCGTCTGCTGATCTGGAGGGGTGTATTGTGATTCGGGCTGATTTGGACACTTTCATGCACATCATTTGGTGTTTGTTCGTCATCCAGgtgtttgtttcattgtttgaAGTGAATCACCAGGGTtaaatgaaccattttaggggGAAAATGAGAGTTGCCATCAATAATAGGATACACATTTAACTAGAAAACATACCTTTGCATTGTTTAACTGGCAAATATTTAGCCGTGTAGCCCAAATTACTGCGTGTTGTTCCATTAACATtaacatgaattacaaaatat

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0071277 cellular response to calcium ion biological_process
GO:0006887 exocytosis biological_process
GO:0099643 signal release from synapse biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0060627 regulation of vesicle-mediated transport biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0065008 regulation of biological quality biological_process
GO:0015837 amine transport biological_process
GO:0051179 localization biological_process
GO:0048791 calcium ion-regulated exocytosis of neurotransmitter biological_process
GO:0015844 monoamine transport biological_process
GO:0015850 organic hydroxy compound transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:2001023 regulation of response to drug biological_process
GO:0015872 dopamine transport biological_process
GO:0032940 secretion by cell biological_process
GO:0046903 secretion biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0048284 organelle fusion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0050432 catecholamine secretion biological_process
GO:0050433 regulation of catecholamine secretion biological_process
GO:0055067 monovalent inorganic cation homeostasis biological_process
GO:0007610 behavior biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0030537 larval behavior biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0017157 regulation of exocytosis biological_process
GO:0017158 regulation of calcium ion-dependent exocytosis biological_process
GO:0007626 locomotory behavior biological_process
GO:1903530 regulation of secretion by cell biological_process
GO:0140115 export across plasma membrane biological_process
GO:0023061 signal release biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0061024 membrane organization biological_process
GO:0061025 membrane fusion biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0030004 cellular monovalent inorganic cation homeostasis biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0051592 response to calcium ion biological_process
GO:0015696 ammonium transport biological_process
GO:0014046 dopamine secretion biological_process
GO:0051046 regulation of secretion biological_process
GO:1903305 regulation of regulated secretory pathway biological_process
GO:0014059 regulation of dopamine secretion biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0008345 larval locomotory behavior biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0071241 cellular response to inorganic substance biological_process
GO:0051640 organelle localization biological_process
GO:0051937 catecholamine transport biological_process
GO:0071248 cellular response to metal ion biological_process
GO:0051648 vesicle localization biological_process
GO:0051650 establishment of vesicle localization biological_process
GO:0051952 regulation of amine transport biological_process
GO:0016050 vesicle organization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0097060 synaptic membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0030141 secretory granule cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0071944 cell periphery cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0036477 somatodendritic compartment cellular_component
GO:0031982 vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0005391 sodium molecular_function
GO:0072341 modified amino acid binding molecular_function
GO:0005484 SNAP receptor activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0001786 phosphatidylserine binding molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005215 transporter activity molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0030276 clathrin binding molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0016887 ATPase activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045132 lncRNA downstream 201191 42622345 ~ 42627442 (-) True XLOC_022625
TCONS_00044553 lncRNA downstream 374094 42414335 ~ 42454539 (-) True XLOC_022622
TCONS_00045131 lncRNA downstream 413922 42362045 ~ 42414711 (-) False XLOC_022622
TCONS_00045130 lncRNA downstream 493642 42333321 ~ 42334991 (-) True XLOC_022621
TCONS_00044757 lncRNA downstream 493662 42331919 ~ 42334971 (-) False XLOC_022621
TCONS_00044561 lncRNA upstream 53441 42884603 ~ 42897815 (-) False XLOC_022630
TCONS_00044562 lncRNA upstream 62973 42894135 ~ 42902381 (-) False XLOC_022630
TCONS_00044563 lncRNA upstream 69774 42900936 ~ 42906528 (-) True XLOC_022630
TCONS_00044565 lncRNA upstream 412929 43244091 ~ 43247121 (-) False XLOC_022632
TCONS_00045137 lncRNA upstream 412929 43244091 ~ 43289451 (-) False XLOC_022632
TCONS_00044557 mRNA downstream 17969 42765700 ~ 42810664 (-) True XLOC_022627
TCONS_00044555 mRNA downstream 76083 42726161 ~ 42752550 (-) False XLOC_022626
TCONS_00044556 mRNA downstream 76246 42736799 ~ 42752387 (-) True XLOC_022626
TCONS_00044551 mRNA downstream 596509 42219613 ~ 42232124 (-) True XLOC_022620
TCONS_00044549 mRNA downstream 735096 41949575 ~ 42093537 (-) False XLOC_022619
TCONS_00044559 mRNA upstream 4963 42836125 ~ 42876596 (-) False XLOC_022629
TCONS_00044560 mRNA upstream 4963 42836125 ~ 42883522 (-) True XLOC_022629
TCONS_00044566 mRNA upstream 469730 43300892 ~ 43307237 (-) True XLOC_022633
TCONS_00044567 mRNA upstream 489741 43320903 ~ 43393589 (-) False XLOC_022634
TCONS_00044568 mRNA upstream 530363 43361525 ~ 43393083 (-) True XLOC_022634
TCONS_00044554 other downstream 313631 42508734 ~ 42515002 (-) True XLOC_022624
TCONS_00044552 other downstream 424953 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044546 other downstream 1065707 41754490 ~ 41762926 (-) True XLOC_022615
TCONS_00044542 other downstream 1482775 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044540 other downstream 1541184 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044558 other upstream 4963 42836125 ~ 42876485 (-) False XLOC_022629
TCONS_00044564 other upstream 190032 43021194 ~ 43125946 (-) True XLOC_022631
TCONS_00044573 other upstream 699439 43530601 ~ 43530715 (-) True XLOC_022637
TCONS_00044578 other upstream 1179263 44010425 ~ 44010541 (-) True XLOC_022645
TCONS_00044606 other upstream 1992921 44824083 ~ 44838825 (-) False XLOC_022660

Expression Profile

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