RNA id: TCONS_00044560


Basic Information

Item Value
RNA id TCONS_00044560
length 2576
RNA type mRNA
GC content 0.51
exon number 7
gene id XLOC_022629
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 42836125 ~ 42883522 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGAGCAGTGCTTCATGGCCAGCGCTGCTTACGGACAGTTGGAGTCTCAGGCGGTGGAGGCTCTGGATCTTCCCACTCCCACCTGCTTCCGGTCCAGGAGCCACAGTTACCTGAGGGCCATCCAGGCCGGCTGCTCGCAGGATGAGGACACTGGATCTGTGGATTCAGACGAGACGCCGCCTATCACCTCCTCCATCAGCAGCTGCAACAGCGTCACCGTCTCCACATGTACGGCGGTGTGTAAGAAGAATCCTCCACCTGTTCCTCCACGCAACGCCTCCAAACCCTACATCTCTGTCACTGTCCAGAGCAGCACCGAATCTGCGCAGGACACCTACCTAGACAGTCAGGACCAGCGGAGCGAGGtcaacagccaatcaggacgcagcaACTCCTCCGACAGCCTCGCCAGCTCTCGGACAGGCAGTCTGGTGAAGGGCTCCAAGCGGCCGCCCATCCTGCCGCCAATCCCTGCTCCGCGGGAACCCGTACAGCTGCCCAGCGCCAGGGTGACCACACCCCCTCCTGCAATAGCCCCGCCCACTCCAGCCCCCGATGCAAAACCCCAGCCCCTGAGCCTCACTCTGGTCCCAGACGAACCACAAGCTCCACCCAAGAGGAAGCTCTCATCCATTGGGATTCAGGTGGATTGTGTGCAGCCGATTCTGAAGGAGGAACAAACCCCCACCACCAGGTTCCAGTCCATCGGGGTTCAGGTTGAAGACGGCAGGCCACTCAGCCGCTTCACTAGCATGGCGTCTAGACAGGAGACGACGGAGGCTGAATCTCAGGAGCAGTCCGACggtaaacatttgggaaataaaacGCCCGGTCAATCTTTGGACAAACCCTCCCTGGCGGACATGACCCGCTCTGCTTCGACCTCGCTGCAGGAGAAGTTGGATCCAGCATTGGACCCATCCCGCCTCCCTCCACCAGACCCGTCTCTGCAGTCCGGCAGCGGGAGCGTTAATGGAGCCGTAGAGCAGCCTGGGGGATCGGCCTGCCTCAGGGACGGGCGATGCTTTCAGAAGCTTCTCCAGGCCGAAACCGACCGCATGGAGGCCTGGTGTCAGCAGATGGAGGAGGAGACCAAAGACAAGCAGCTGTCGGAGGAGGtgttagGGAAGATCCGCAGTGCTGTCGGCAGCGCTCAGCTCTTAATGTCGCAGAAGTTTCGGCAGTTCCAGGGTCTTTGTGAGCAGAACCTGGATGTGAGTGCTCAGCCTCGGCCCACGGCTCAGGATCTGGCAGGTTTCTGGGATCTCCTTCAGCTCTCCATCGAGGACATCAGCATGAAGTTTGATGAGCTTCACCTCCTCAGGTCCAACGACTGGAAGACGACTGACAAAAAGGAGGAGAAGAAGTCTGCTCCATCGCACACACCAAAGAAGACGGTGAAGGTGAAACCCAGCGGCGGGAAGGAAAAAAGCCTGGACTCTGTGGCTGACAAACAGCGTCAAGAAGCCAGAAAACGTCTGATGGCGGCGAAGCGAGCGGTTTCTGAACGCCAGAATTCCGCCACCGAGAGCGCCGAAAGCATCGAAATCTACGTTCCTGAGGCTCAGACGCgactctaataaaaaaaaaaaacacaacattaaaaaCTCCAGGTCATGAAGAAACACTCAGAAACCGAGGTCGGATTGAAAGCTGAAAACTTAATTGCAAAATGAAAAATACGTCAAAATGCAAGCAAATCGATTTTGAACGCTCAAGCGCTGCCACAGAAGAACCTCCCGTTGACGTTCGTTTCTACGATTAACCTTGTTATAACTATAAATGTCCTAAAAAAGTGAATTATCTCATGGAATATATCAAGACTCTTGTCTGTAAATTGTGCTAATAATATCTTAATAAGAGAAGACGTTCTTGAGACCCTTTACACGCGTCACATGATCCGCTATTTTCACTCGTCACATGACCCGCGGACGGCCAACGTACAGCATGCACTCAGGATCCGCACGTGTGCACTTGTCTTTCATCGGCTCAGTCTTCCTGTTTTCTTCCTGCTTTTTGTTCTTCATCCGGAGCTCAAGAGCGCCCCCTGTGGCCATTTCTAGCGACGTTTTCGACGGAAAGCTCAAAATGTGAACGAATTACTATAGGAATTGGTAGaataacacagtttttttattattattagcactcctctagttttgtttgtttcatgtcATTATTCATTCCAGTAAAATTGAACGCAATTTAACGCATTTCAGCTTGTTTTATTTTTCGAACCGGTTTCTTTAGTTAACAGGGATGAAATATGACCACTCGAACGTTGTTTTAAAATGACGAATGTTTAAGGAACGTGATGGCGATGTCCAGATTTTTACTTGGACCCCGACAGCctgtttgttttgtaatattattattattattaatattatgattgttttatctgttgttcattcattcattccatgtGTTTTCCAGCACACGCTTGTGTTCAGATCAAGCCATGAACGTACAGCCGTGTGTTTGTGTGACCAATTAGAGCCCTTCATTTGTgatcagttgttttttttatcgTTATTTTTCTTTGTCAGATATTAAAAACCTCCGTTACCCAGAA

Function

GO:

id name namespace
GO:0023052 signaling biological_process
GO:0098962 regulation of postsynaptic neurotransmitter receptor activity biological_process
GO:0098978 glutamatergic synapse cellular_component
GO:0099572 postsynaptic specialization cellular_component
GO:0060090 molecular adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080219-51 Predicted to enable molecular adaptor activity. Predicted to be involved in regulation of postsynaptic neurotransmitter receptor activity. Predicted to act upstream of or within signaling. Predicted to be active in glutamatergic synapse and postsynaptic specialization. Orthologous to human DLGAP4 (DLG associated protein 4).

Ensembl:

ensembl_id ENSDART00000148500

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045133 lncRNA downstream 4963 42828633 ~ 42831162 (-) True XLOC_022628
TCONS_00045132 lncRNA downstream 208683 42622345 ~ 42627442 (-) True XLOC_022625
TCONS_00044553 lncRNA downstream 381586 42414335 ~ 42454539 (-) True XLOC_022622
TCONS_00045131 lncRNA downstream 421414 42362045 ~ 42414711 (-) False XLOC_022622
TCONS_00045130 lncRNA downstream 501134 42333321 ~ 42334991 (-) True XLOC_022621
TCONS_00044561 lncRNA upstream 1081 42884603 ~ 42897815 (-) False XLOC_022630
TCONS_00044562 lncRNA upstream 10613 42894135 ~ 42902381 (-) False XLOC_022630
TCONS_00044563 lncRNA upstream 17414 42900936 ~ 42906528 (-) True XLOC_022630
TCONS_00044565 lncRNA upstream 360569 43244091 ~ 43247121 (-) False XLOC_022632
TCONS_00045137 lncRNA upstream 360569 43244091 ~ 43289451 (-) False XLOC_022632
TCONS_00044557 mRNA downstream 25461 42765700 ~ 42810664 (-) True XLOC_022627
TCONS_00044555 mRNA downstream 83575 42726161 ~ 42752550 (-) False XLOC_022626
TCONS_00044556 mRNA downstream 83738 42736799 ~ 42752387 (-) True XLOC_022626
TCONS_00044551 mRNA downstream 604001 42219613 ~ 42232124 (-) True XLOC_022620
TCONS_00044550 mRNA downstream 870568 41949576 ~ 41965557 (-) True XLOC_022619
TCONS_00044566 mRNA upstream 417370 43300892 ~ 43307237 (-) True XLOC_022633
TCONS_00044567 mRNA upstream 437381 43320903 ~ 43393589 (-) False XLOC_022634
TCONS_00044568 mRNA upstream 478003 43361525 ~ 43393083 (-) True XLOC_022634
TCONS_00044569 mRNA upstream 521683 43405205 ~ 43454523 (-) False XLOC_022635
TCONS_00044570 mRNA upstream 523667 43407189 ~ 43424510 (-) False XLOC_022635
TCONS_00044554 other downstream 321123 42508734 ~ 42515002 (-) True XLOC_022624
TCONS_00044552 other downstream 432445 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044546 other downstream 1073199 41754490 ~ 41762926 (-) True XLOC_022615
TCONS_00044542 other downstream 1490267 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044540 other downstream 1548676 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044564 other upstream 137672 43021194 ~ 43125946 (-) True XLOC_022631
TCONS_00044573 other upstream 647079 43530601 ~ 43530715 (-) True XLOC_022637
TCONS_00044578 other upstream 1126903 44010425 ~ 44010541 (-) True XLOC_022645
TCONS_00044606 other upstream 1940561 44824083 ~ 44838825 (-) False XLOC_022660
TCONS_00044607 other upstream 1943035 44826557 ~ 44829277 (-) True XLOC_022660

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01072889_00000369_00006265.mRNA True 1004 mRNA 0.60 4 CI01072889 369 ~ 6265 (-)