RNA id: TCONS_00044563


Basic Information

Item Value
RNA id TCONS_00044563
length 1805
lncRNA type lincRNA
GC content 0.55
exon number 2
gene id XLOC_022630
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 42884603 ~ 42906528 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGACTCACTGTGGTCTAATATATCCGTGTTTATGCGTGTGTTTTCTCTGTCCTCCAGGTGTCGTCCTCCAGGGCCGTTCACTCTCTTCCTCAGGCGGCGGCATGTTTTAGGACGGACCCTTCGCCGCGACCATGAAAAGCTTAGGGGCGAACCGTAGCCGCCATCTGTCCGACACCTGCGACCCCACAGCGGGCCCCCAGGAGCCGCTGTGCCCCCTGGCTCCGGACCCCCACGCCACCTTCCTCCTGAGCCCAAGCGTCAACCATTATGGCACTCTGGACCCTCATCTCCATCACTTCCCAGTGTCTCCTCCGACGGCGGCGCTTCAGTCCGACTGCCTGCTGCCGCTCAACAACCAGATGAGCAACAGCAGCACCTTCCCTCGCCTGCACTACAGCGGCCCGCAGGAGCACAGCGAATACACACAGGGTTGTGTGACTCAGACGGGCAGTCGCTCGGGCACCCTCACCTCGTCCATGTCCATGGGTCTTGGTCTGGGCCTCGGCGCTCCAGCAATGATCAGCAGCGGTACAGCCACAATCTCCTCTGCTACTGCCGCCAAGATGAACCGACTGCCGGCTAATCTGCTGGACCAGCTGGAGCGCCACCTACCGCTGCAGCGCGACGGCTTCAGCACGCTACAGTTCCACCGGCGCAGCCGCGGCTCCAAACCACGCAGCGAGAGCCCCAGCCGCATCCGAAACCTGGTGCAGTCTGTGCAGAAGCTCTTCGCAAAGTCACAATCCCTAGAGGTGTCCGCAATTAAAGCCGGCAGCATAACAAGCGGAGATAAAACCGGCAGACGAAGCAAAAGCAAAGATCGTGCAAAAACCGAAGGCACCAAACGTCGCCCGAGACCCAATCTCTCCGGTTTCTGGAGCTCAGATGATGGTTTAGAGGATGATCCGCCAGCTCAACCCACCGCTGGGCCGCTAGCGGTGGCATATCGTAACCCGCTTAGCATGATGACACTAGGCAGAGCTGTATCTGACAGCCAGGCGGCGCTCAAACCGCATCCGCAGGGCTACAACACCATCGCCGCGCTCAAATCCTCCAAGAGCAGCGGAGAGCTGAAAGCACAGGCCAGTCTGCCACCAGCTGGAGCCCAGCACGCAGAGCTGGTGAAGAGAGGCTCCTGGTCCACGCTGACCCTCAGTCAGGCCAGACAGGTGCTGCAGAAGAGCTCCGCCACCGTCAACCGCACGCTGCTCAAGTCCAAGTCCTGCCACGGACAGGAGATGACCTGCAACTTCCTACAGGTCAGAGACACACATGAGGTGTCATTATGACACACTTGGATATTGCTTGATTATAATAGCaggctgtcccgggagagacccctgagcttggagatgattgagcccagggctcctgcctggtcaatgagcatgtgagGGAGTACAACATCAGGCAGTTCCCCTGGTAAAAGAAGAAAGGAGGAGAtagggtggatggggggattcttcaaaaaatgcTAGTAATGCTAGTCgagttatttatagtgagtttggaacgatccgattggcttactaatgattacagatgagagaccagctgcgattTGTGCTTCActatttcccaaccctgttcctgaaggcacaccaacagtacatattttggatgtctcccttatctgactcATTATTtttaggttttggagtctcttctaacgttctgatgagttgattcaagTGTGATTGATTTGGAAGAGGTTGAAAAGGTGAACTGTTGATGTGcttttaggaacagggttgggttataaacacacacacacacacacacacacacacatatatatatatata

Function

GO:

id name namespace
GO:0071277 cellular response to calcium ion biological_process
GO:0099643 signal release from synapse biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0051592 response to calcium ion biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0071241 cellular response to inorganic substance biological_process
GO:0010035 response to inorganic substance biological_process
GO:0071248 cellular response to metal ion biological_process
GO:0010038 response to metal ion biological_process
GO:0097060 synaptic membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0030425 dendrite cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0071944 cell periphery cellular_component
GO:0097447 dendritic tree cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0036477 somatodendritic compartment cellular_component
GO:0016020 membrane cellular_component
GO:0098794 postsynapse cellular_component
GO:0099095 ligand-gated anion channel activity molecular_function
GO:0022803 passive transmembrane transporter activity molecular_function
GO:0022824 transmitter-gated ion channel activity molecular_function
GO:0022834 ligand-gated channel activity molecular_function
GO:0022835 transmitter-gated channel activity molecular_function
GO:0022836 gated channel activity molecular_function
GO:0022839 ion gated channel activity molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function
GO:0015267 channel activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005237 inhibitory extracellular ligand-gated ion channel activity molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194587

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044561 lncRNA downstream 3121 42884603 ~ 42897815 (-) False XLOC_022630
TCONS_00045133 lncRNA downstream 69774 42828633 ~ 42831162 (-) True XLOC_022628
TCONS_00045132 lncRNA downstream 273494 42622345 ~ 42627442 (-) True XLOC_022625
TCONS_00044553 lncRNA downstream 446397 42414335 ~ 42454539 (-) True XLOC_022622
TCONS_00045131 lncRNA downstream 486225 42362045 ~ 42414711 (-) False XLOC_022622
TCONS_00044565 lncRNA upstream 337563 43244091 ~ 43247121 (-) False XLOC_022632
TCONS_00045137 lncRNA upstream 337563 43244091 ~ 43289451 (-) False XLOC_022632
TCONS_00045136 lncRNA upstream 337563 43244091 ~ 43289451 (-) False XLOC_022632
TCONS_00045135 lncRNA upstream 337563 43244091 ~ 43289451 (-) False XLOC_022632
TCONS_00045134 lncRNA upstream 337563 43244091 ~ 43289451 (-) False XLOC_022632
TCONS_00044560 mRNA downstream 17414 42836125 ~ 42883522 (-) True XLOC_022629
TCONS_00044559 mRNA downstream 24340 42836125 ~ 42876596 (-) False XLOC_022629
TCONS_00044557 mRNA downstream 90272 42765700 ~ 42810664 (-) True XLOC_022627
TCONS_00044555 mRNA downstream 148386 42726161 ~ 42752550 (-) False XLOC_022626
TCONS_00044566 mRNA upstream 394364 43300892 ~ 43307237 (-) True XLOC_022633
TCONS_00044567 mRNA upstream 414375 43320903 ~ 43393589 (-) False XLOC_022634
TCONS_00044568 mRNA upstream 454997 43361525 ~ 43393083 (-) True XLOC_022634
TCONS_00044569 mRNA upstream 498677 43405205 ~ 43454523 (-) False XLOC_022635
TCONS_00044570 mRNA upstream 500661 43407189 ~ 43424510 (-) False XLOC_022635
TCONS_00044558 other downstream 24451 42836125 ~ 42876485 (-) False XLOC_022629
TCONS_00044554 other downstream 385934 42508734 ~ 42515002 (-) True XLOC_022624
TCONS_00044552 other downstream 497256 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044546 other downstream 1138010 41754490 ~ 41762926 (-) True XLOC_022615
TCONS_00044542 other downstream 1555078 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044564 other upstream 114666 43021194 ~ 43125946 (-) True XLOC_022631
TCONS_00044573 other upstream 624073 43530601 ~ 43530715 (-) True XLOC_022637
TCONS_00044578 other upstream 1103897 44010425 ~ 44010541 (-) True XLOC_022645
TCONS_00044606 other upstream 1917555 44824083 ~ 44838825 (-) False XLOC_022660
TCONS_00044607 other upstream 1920029 44826557 ~ 44829277 (-) True XLOC_022660

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000193_00257738_00262076.mRNA True 3120 mRNA 0.50 3 CI01000193 256429 ~ 262504 (+)