RNA id: TU1540371


Basic Information

Item Value
RNA id TU1540371
length 1563
RNA type TUCP
GC content 0.58
exon number 8
gene id LOC110492842
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17235828 ~ 17305959 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGAACAGACATACTCACACCAACCCGAAAACACTCTCCCCCGTGCAGTGTGGTTGTACCAGAACAACTGGAACGGAGACAAAAACATGGATGCAGAGAAAACAGAAGAATGAAgagagaagcagaagaagaaagaAGGAAAAGAAAGACGACTTAATAGAAGAATATATACTATGAGGAGAACAGAAAACAGAGTGAAAGGAGCTGAGATCCAGTACTAACACAGTACAGGACGGTGGAGAAGTGTGACTGTCGTGGTGCAGAATGGGAAATTCTTCATCCCCAGGCATGTCAACTCTATCTCCGTGCATACTGTAGTTACTGCAGgcccacctctctctcccctgtctcatcAACGGAAACCGGCATACACGGTGAGGCGTCTCCTGAAGGTTCGACCTCGGGCAGGGGATTCcaatacctggttgactgggagggttatggcccggaggagaggtgctgagTTCCCGCTAGGGACATCCTGGACCTAGGCCTCATCGCTGAGTTCCAACGCCGGCACCCAggtcaaccagGTCGGGAGAGAAGAAAGGGTCACATGATCTCCACTGGGGATGCAGAGTTCCCGTGTGAGTACCACACCCTGGGCCACGGCGGCACGCGCTGTTTccctcacaacaacaacaacaacggcgGGCTGGCGCCAACCTCTGGGAACCGCCAACGCCACAACACCCTTGCTGCCAAGAGCCTGGAGGCCCTTACGAACCTTCACAAGGCTGACATAAAGCGCCAGCACGAAGCCTTTATGGACCTCCAGAAAAATCAGAAGTATCCGGCCAGCCCCTGTATGTCTCAGGGCCAGAGATCACCTAACTTTGGCCGCCAACAGCAGCAACAGCCAAACTACTGGAGCTTCAAGGCCCGAACCCCCCGTGTGATCCGACGCAACCCCGACCAGCCGGCTCTAGCCGACCAGGCCAGCAGGGTGTCCTTTGCCTCGGCTGAGAGTCTGGAAACCATGTCTGAGGCCGACGTTCCCCTCGGGTTCAACCGCATGAACCGCCTCCGCCAGAGCCTCCCCCTGGCACGCTCATCCAGCCAGGCCAAGCTCCGTGCGCCAGgCATTCTCTTCCTCCAGCTGGGCGAGGAGACGAGGCGGGTGCACCTGACCCACGAGCTGACCAGTCTGGAGACCCTGAGAGCCCTCATTGTCCACATGTTTCCCCAGAGGCTGACCATGGCAATGTTAAGGTGCCCCAGCACGGCCCTGCTGATTAAGGATGAGGCCCGTAACGTATTCTATGAGCTGGAGGACCCACGAGACGTACAGGACCGCTGTGTCATCAAGATCTACTGTAAGGAGCCTGTCTACGGCACCTACCCCGGACACCACAACCCACATCTGGCCAACGGAGACCTCCGGAGGGAGATGGTGTACACGCCCCAGCATGATTCTCCGTCCAACCGTCGCCTCAGCAATGCCCCCGCCTCCTCCTCCGCCTCGACCCCCTCCAGCTCCCCGTCCCGCGTCCGTCTCCTCTACAGTGGCGGTGGCCGTCCATCCTCCTATGCCGGGCAACCTCACCTCCAGCATCACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1540306 lncRNA upstream 7659 17226026 ~ 17228624 (+) True G1347339
TU1540271 lncRNA upstream 24166 17162511 ~ 17212117 (+) True LOC110491469
TU1540269 lncRNA upstream 74383 17161554 ~ 17161900 (+) True G1347312
TU1540268 lncRNA upstream 74845 17161198 ~ 17161438 (+) True G1347311
TU1540267 lncRNA upstream 75544 17160441 ~ 17160739 (+) True G1347310
TU1540365 lncRNA downstream 24200 17298180 ~ 17305959 (+) True LOC110492842
TU1540442 lncRNA downstream 72047 17346027 ~ 17403162 (+) True LOC110491476
TU1540458 lncRNA downstream 82425 17356405 ~ 17357765 (+) True G1347471
TU1540467 lncRNA downstream 106449 17380429 ~ 17381191 (+) True G1347476
TU1540495 lncRNA downstream 168763 17442743 ~ 17466463 (+) True dusp3a
XM_021564941.2 mRNA upstream 24166 17207038 ~ 17212117 (+) False LOC110491469
XM_021564938.2 mRNA upstream 29569 17199857 ~ 17206714 (+) False LOC110491468
XM_036946350.1 mRNA upstream 29569 17199857 ~ 17206714 (+) False LOC110491468
XM_036946351.1 mRNA upstream 29569 17199869 ~ 17206714 (+) True LOC110491468
XM_036945875.1 mRNA upstream 38360 17186889 ~ 17197923 (+) True LOC110491467
XM_036946360.1 mRNA downstream 89346 17363326 ~ 17376056 (+) False aarsd1
XM_036946361.1 mRNA downstream 89346 17363326 ~ 17376056 (+) False aarsd1
XM_036946362.1 mRNA downstream 89346 17363326 ~ 17376056 (+) False aarsd1
XM_036946363.1 mRNA downstream 89346 17363326 ~ 17376056 (+) True aarsd1
XM_021564952.2 mRNA downstream 120358 17394338 ~ 17403166 (+) False LOC110491476
TU1539740 other upstream 79613 17155454 ~ 17156670 (+) True LOC110491464
TU1539652 other upstream 290039 16945928 ~ 16946244 (+) True G1346758
TU1538191 other upstream 1692746 15542391 ~ 15543537 (+) True G1345431
TU1538174 other upstream 1711715 15524002 ~ 15524568 (+) True G1345417
TU1537885 other upstream 1752770 15483147 ~ 15483513 (+) True G1345170
TU1540858 other downstream 322739 17596719 ~ 17603471 (+) True LOC110491483
TU1542039 other downstream 1281197 18555177 ~ 18555452 (+) True G1348897
TU1542100 other downstream 1478643 18752623 ~ 18760420 (+) False LOC110491516
TU1542335 other downstream 1865047 19139027 ~ 19141677 (+) True LOC110491534
TU1543395 other downstream 2463182 19737162 ~ 19738034 (+) True G1350066

Expression Profile