RNA id: TCONS_00005728


Basic Information

Item Value
RNA id TCONS_00005728
length 620
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_002327
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 37865419 ~ 37889561 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAcaatcatttctcttttaacagaCGAGGAGGTGAAAGAGAGGAAGAGAAAAAAGAGCCGGCTGGCATCATTCCTCAGATCTTGCAGGAAACACCTGACAATCTCCTGCCTCACCCCTAATAAAGAAATCGAGCTGGagaatgaagaggaggaggaagagcaaATAGATCTCCCAATCTCTCCACCCAAAGGCGCTGATGGTAAATGAACATGTTTACATCAACATATCAGTCTATACTGCTATTAATAAATTGTAAACTTTAACATCTTGTTGAAAATcactttgtaaaatgtgtaaccacttcatttctcttttaacagaTGACTTTCTGCGCAACTCAACGATTGAGCATCATCAAATCATAGTGACTCCCGTGATACACAGAGAGCCTTGTGTGGAAGATGAGATAAATGTCAGCCAAGGAGAAATATTAATGAAGAAAACTACTTCATACTGTGGAGAacaagaggaggaggagggcaaGATTAAAGAGGAGATGAAGGAGAAGAAGAGGAGAAGGAGAAGGAAGAAAGAGCAGGAGAAAACGGAGGAGACAATGATGGACAAGAAGGAGGAGGAGGGCAAGATTGAGGAGGAGGATGGAAGGAAAGGGAGAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005930 lncRNA upstream 136259 37500246 ~ 37729160 (+) False XLOC_002326
TCONS_00004431 lncRNA upstream 136259 37503856 ~ 37729160 (+) True XLOC_002326
TCONS_00004428 lncRNA upstream 291660 37500246 ~ 37573759 (+) False XLOC_002326
TCONS_00004430 lncRNA upstream 291749 37500475 ~ 37573670 (+) False XLOC_002326
TCONS_00005929 lncRNA upstream 386863 37478245 ~ 37478556 (+) True XLOC_002325
TCONS_00005931 lncRNA downstream 135484 38025045 ~ 38034835 (+) True XLOC_002330
TCONS_00005932 lncRNA downstream 542777 38432338 ~ 38433209 (+) True XLOC_002332
TCONS_00004449 lncRNA downstream 859705 38749266 ~ 38760444 (+) False XLOC_002344
TCONS_00005729 lncRNA downstream 859791 38749352 ~ 38751512 (+) False XLOC_002344
TCONS_00005933 lncRNA downstream 859805 38749366 ~ 38759209 (+) True XLOC_002344
TCONS_00004427 mRNA upstream 81395 37500234 ~ 37784024 (+) False XLOC_002326
TCONS_00004429 mRNA upstream 85671 37500268 ~ 37779748 (+) False XLOC_002326
TCONS_00004426 mRNA upstream 450196 37400838 ~ 37415223 (+) True XLOC_002324
TCONS_00004425 mRNA upstream 470462 37268854 ~ 37394957 (+) True XLOC_002323
TCONS_00004424 mRNA upstream 608430 37182626 ~ 37256989 (+) True XLOC_002322
TCONS_00004432 mRNA downstream 37539 37927100 ~ 37928125 (+) True XLOC_002328
TCONS_00004434 mRNA downstream 91910 37981471 ~ 38008370 (+) False XLOC_002329
TCONS_00004433 mRNA downstream 91910 37981471 ~ 38008370 (+) False XLOC_002329
TCONS_00004435 mRNA downstream 102965 37992526 ~ 38005573 (+) False XLOC_002329
TCONS_00004436 mRNA downstream 110500 38000061 ~ 38005573 (+) True XLOC_002329
TCONS_00004421 other upstream 717635 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 904729 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004403 other upstream 1196385 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004398 other upstream 1422572 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004384 other upstream 1576916 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004438 other downstream 599147 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004441 other downstream 658528 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004447 other downstream 794105 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004472 other downstream 1802816 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 1871193 39760754 ~ 39760879 (+) True XLOC_002356

Expression Profile

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