RNA id: TCONS_00004435


Basic Information

Item Value
RNA id TCONS_00004435
length 1924
RNA type mRNA
GC content 0.50
exon number 8
gene id XLOC_002329
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 37981471 ~ 38008370 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAAGAGCCCAATCTTCCTTAAAGGATGACGATCAGAGCAGCATCTACATTGTATAATCGATTTACTTGTCCAGAATAAGTCTAGAAGTTTTGTCTGGATGGTTTGAACCAGGATGGCCAAGCCGTCCTACAGACTGCAGCACTTTTTAAGGCGAGCTCACTTGCTCCTGTTTTTTCTCGGTGTGGCTTACATCATGGCAGGGAGCGTTTTACTACTTCAGCGCTCTAGTGTGGTAACATTTCAGAGGGACACAGAAACAGTGGCACTCCCTTCCCTACCAGCGCCACCTAGAGCCCTGGAGGGACCTGCTGTAAGGTGGCTGTACAGGAGGAACATCATCCAGGAGATAGAAAATCTTGATCACACAGACAACAGAAATGACCAGAAGCACCTCATAACTCCTAACCTGGAGATTAGGCATCTCAGACGCCACTGGTTTCAAAGCAGTGCTGAACAGAAAAGCTTTTCTGAACATCATTTACTACAAAAGGAAGCAAGACAAAAAGGGACCTACATTGGATGTTTCATAAATAATGAGACGGAGCATGCACTCGGCGGGACCATTCTGTATGATTTTCGTAAAATGACCAGCACCTTGTGCCAGGACACCTGCTCAGAGAGTGGTTTCCGGTATGcaggattggagtttggatcagagTGTCACTGTGGGAATCGCGTGTGTGCTCGTCGGGCTCGAGGAGAGGACTGTAATCTGGACTGCCGGGGAGAGAAGGGATCCCCATGTGGAGGGGTGGGACGCATGTCTGTTTACAGGGTTGAGGATCGTCTTCCAGGACAGAGGAGATCGGCTGACCTCCTGATCCACACCTCTGGACCGACACACACTCCTCAGCAGTGTATTGAGAGCTGTACAGATCAGGACCTGCCACTGGCTCTTTTGAGAGGACAGGACTGTTTCTGCAGCCGTGCCTCATTTCTTTTGACAATCCAGATGAGTGAAAATGACCAAATGTGCAAGAAGGCCAACCAAACAAACCAGACTTCCCTTCATGACCTCGACTTCTACTGGGTGTACAGCACTCCGGTGCTAGATGCAACGTGCAAAGAAAGGTCATTTCTGGCCCAGAAGTCCAGCTCTCTTGTGGCCCTGTCCAGTTTTCCAGGAGCAGGAAACACTTGGCTGCGTCACCTGATCGAACTCGTCACCGGATTCTACACCGGCAGCTATTACTTTGACGGATCTCTGTACAATAAAGGTTTTAAAGGAGAGAAGGATTACTGGCAGAGCGGGAGAGTGGTCTGCGTCAAGACTCATGAAAGTGGCCAGCGAGAGATCCAGATGTTTGACTCTGCCATCTTGCTGATGCGAAACCCGTACCGCTCTCTGATGGCAGAGTTCAACCGCAAGTGTGCAGGACACCTGGGCTACGCATCCCACGCTCACTGGAGGAGCAAAGAGTGGAGTGAGTTTGTGGACAGCTACTCGTCCTGGTGGGTGTCTCACGCTCTGGCCTGGCTGCGCTTTGCCCACCGCTTGTTAGTGGTGCATTTTGAAGACCTCCAGAAAGATGTCGTCCCCCAGATAAAAACAGTCACCGCTTTCCTAAACATCAGCATCCCAGAAGAGAGGCTTCTGTGCATAGAGAGTGACCGAGACGGACATTTCAAACGCTCAGGATCTCATAACCTGAACTTTGACCCCTTCAGCCCAGAGATGAGAGCTCGGATTGACCAGTACATTCAGACGGTGGATAAAGCCCTGCGGGACAGAAACCACAGCGGCCTGCCACACCAATACATGCCCAGGTGATGGAGGGAGCGCACGCAAACACAAAGTgcctgagtaaaaaaaaaacacaaccttTCAAAtgctgtgtgtttgtctgttggtttgtttgtggtgatgTTGTCACCCGTTTACAGACTGTGCACTTTGTatgctttattaaacagaatAATTCA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-93 Predicted to enable sulfotransferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human WSCD1 (WSC domain containing 1).

Ensembl:

ensembl_id ENSDART00000135480

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005728 lncRNA upstream 102965 37865419 ~ 37889561 (+) True XLOC_002327
TCONS_00005930 lncRNA upstream 263366 37500246 ~ 37729160 (+) False XLOC_002326
TCONS_00004431 lncRNA upstream 263366 37503856 ~ 37729160 (+) True XLOC_002326
TCONS_00004428 lncRNA upstream 418767 37500246 ~ 37573759 (+) False XLOC_002326
TCONS_00005931 lncRNA downstream 19472 38025045 ~ 38034835 (+) True XLOC_002330
TCONS_00005932 lncRNA downstream 426765 38432338 ~ 38433209 (+) True XLOC_002332
TCONS_00004449 lncRNA downstream 743693 38749266 ~ 38760444 (+) False XLOC_002344
TCONS_00005729 lncRNA downstream 743779 38749352 ~ 38751512 (+) False XLOC_002344
TCONS_00005933 lncRNA downstream 743793 38749366 ~ 38759209 (+) True XLOC_002344
TCONS_00004432 mRNA upstream 64401 37927100 ~ 37928125 (+) True XLOC_002328
TCONS_00004427 mRNA upstream 208502 37500234 ~ 37784024 (+) False XLOC_002326
TCONS_00004429 mRNA upstream 212778 37500268 ~ 37779748 (+) False XLOC_002326
TCONS_00004426 mRNA upstream 577303 37400838 ~ 37415223 (+) True XLOC_002324
TCONS_00004425 mRNA upstream 597569 37268854 ~ 37394957 (+) True XLOC_002323
TCONS_00004437 mRNA downstream 411939 38417512 ~ 38428094 (+) True XLOC_002331
TCONS_00004439 mRNA downstream 506697 38512270 ~ 38521710 (+) True XLOC_002334
TCONS_00004440 mRNA downstream 520923 38526496 ~ 38544426 (+) True XLOC_002335
TCONS_00004442 mRNA downstream 554459 38560032 ~ 38586660 (+) True XLOC_002337
TCONS_00004443 mRNA downstream 588072 38593645 ~ 38602561 (+) True XLOC_002338
TCONS_00004421 other upstream 844742 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 1031836 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004403 other upstream 1323492 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004398 other upstream 1549679 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004384 other upstream 1704023 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004438 other downstream 483135 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004441 other downstream 542516 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004447 other downstream 678093 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004472 other downstream 1686804 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 1755181 39760754 ~ 39760879 (+) True XLOC_002356

Expression Profile

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