RNA id: TCONS_00005931


Basic Information

Item Value
RNA id TCONS_00005931
length 903
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id XLOC_002330
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 38025045 ~ 38034835 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGGAACGAGCAGCCCGAGAGATCCGAGTCTAATCAATTCCTATTAGTTTAGCATTTCTCATGCAGCCAGGGGCCTCACGGGACACATAAACGGCAGATCAAATTTGAGCAATATGTTTGATGAAATGATGAGACGGTACAGTATGTGTGGTCTGTGTGAAGGGGCTGCTGGCCATTCATCACCAATATCAATTTTACTGTTTAAATGCCTCAACCACGCAGATTCAGTTTTATCAAACCATCCTTTAACATTAGCGTCACATTATCAACGACAGAGATGAGAAACATGACTTGCTTTACGGGTTTAGCAGATTAGACATTTATTCTCAACACTATGCATTAATTACTAAATACTGACGCGCTGCTGCCCCCTTCTGGACAACAGGAGCACACGCAGCAACAAATGACAACAGCCCATGATGGAGTTGATCCCCCAGCTGTCCTGTGGACGGGACTCTCCACAGTCGGGCGGCTCCATCTGTCGGCGTGCTCGTGTTCTGGCTGCTTCTTCTGTCATGTCTGACACGCAGCTGCACGGGTGTTTGTGCTGGATCTCCAGCAGAAGAGCAGCACCGCTGAGCTGCTGAGAGACAGCAGACACCATCATCCAGTCCACACCATCATCACTTCATCAAGGAGAAACATCCCACTTTTACATTTGACAAAATCACAGGGCAGACCTGGAAAATTCAACCAAATAACGTCATCACAAATAAGGCCTGATCAGCTGATGAGTGGTGATGATTCAGACTCTCACTCAGGTTAAAGAGTTCACCACATCATGAACCAGAAAACCATAGTCAACATCTCTCCTCCTGCCTCGCTTTAGTGCCAACTCCAGGATTAAAGACTCCGAGCAGGCCTGCAGACTCAGGAGAGTCCATTGAGTTCACATCAACAAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005728 lncRNA upstream 135484 37865419 ~ 37889561 (+) True XLOC_002327
TCONS_00005930 lncRNA upstream 295885 37500246 ~ 37729160 (+) False XLOC_002326
TCONS_00004431 lncRNA upstream 295885 37503856 ~ 37729160 (+) True XLOC_002326
TCONS_00004428 lncRNA upstream 451286 37500246 ~ 37573759 (+) False XLOC_002326
TCONS_00004430 lncRNA upstream 451375 37500475 ~ 37573670 (+) False XLOC_002326
TCONS_00005932 lncRNA downstream 397503 38432338 ~ 38433209 (+) True XLOC_002332
TCONS_00004449 lncRNA downstream 714431 38749266 ~ 38760444 (+) False XLOC_002344
TCONS_00005729 lncRNA downstream 714517 38749352 ~ 38751512 (+) False XLOC_002344
TCONS_00005933 lncRNA downstream 714531 38749366 ~ 38759209 (+) True XLOC_002344
TCONS_00004454 lncRNA downstream 1049177 39084012 ~ 39087853 (+) True XLOC_002346
TCONS_00004434 mRNA upstream 16675 37981471 ~ 38008370 (+) False XLOC_002329
TCONS_00004433 mRNA upstream 16675 37981471 ~ 38008370 (+) False XLOC_002329
TCONS_00004435 mRNA upstream 19472 37992526 ~ 38005573 (+) False XLOC_002329
TCONS_00004436 mRNA upstream 19472 38000061 ~ 38005573 (+) True XLOC_002329
TCONS_00004432 mRNA upstream 96920 37927100 ~ 37928125 (+) True XLOC_002328
TCONS_00004437 mRNA downstream 382677 38417512 ~ 38428094 (+) True XLOC_002331
TCONS_00004439 mRNA downstream 477435 38512270 ~ 38521710 (+) True XLOC_002334
TCONS_00004440 mRNA downstream 491661 38526496 ~ 38544426 (+) True XLOC_002335
TCONS_00004442 mRNA downstream 525197 38560032 ~ 38586660 (+) True XLOC_002337
TCONS_00004443 mRNA downstream 558810 38593645 ~ 38602561 (+) True XLOC_002338
TCONS_00004421 other upstream 877261 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 1064355 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004403 other upstream 1356011 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004398 other upstream 1582198 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004384 other upstream 1736542 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004438 other downstream 453873 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004441 other downstream 513254 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004447 other downstream 648831 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004472 other downstream 1657542 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 1725919 39760754 ~ 39760879 (+) True XLOC_002356

Expression Profile

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