RNA id: TCONS_00004437


Basic Information

Item Value
RNA id TCONS_00004437
length 1498
RNA type mRNA
GC content 0.46
exon number 8
gene id XLOC_002331
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 38417512 ~ 38428094 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTGAGTGTGTGAGTGGCTTCAGGCCAGTACAAGTGTCTTCAATAAGAGCTGAGCTGCTTTCTGACAGAGGAGAAATAAAACAGAATCACTAAAAATGCTTCAAAGAAAACCATCAAATGCCTCTGATAAATCAAGAAACAAGCCAAAGCGGTCCACCAGTTTTGGGATATTTGACAGACAACAGCCCAATCAGGTCAAGGCAGAGGATAAAGTAGAAAGTTTGcctgTGGAAAGCCCTGAGGTGGATCCCAGTAAATCAGGAGGTCTAAGCAAGAAGATGAAGAACATCTCGCTGACCATGCGGAAAAAAATGGGCCGGAAATACACGAAAGCCCTGTCAGAGGAAACGGGCGAGGAGAATGAAGCTGCAGCAGCTGACGTTGTGGACGGCACACTAGCCAAAGGCAACAACCACTCCAGTAACTCTGTGGAGAGTCTGTTCAGTCTGCACAGTGGCCAAAGCTCATCTAGTGGTGTGACCAGCGGCTCTGAAGGTTATAGTAACAGAGACAGCCTGCGTTTAGAAGAAGAGGTGCCCTTTGCAGGCCAGTTCTGCGGCAAAGCTAAAGTCCACACTGACTTTGTTCCCAGTCCATACGACACCGAGTCTCTCAAACTCAAGgtTGGAGATGTCATTGACATCATCAACAAACCACCAATGGGAATCTGGACTGGAATGCTGAATGGGAAAGTGGGAAACTTTAAGTTCATCTATGTCGACGTGTTGGTGGAAGAAATCACACCACAACCGAGGATTCGTGCTCACCGGAGGAGCAGGAGACCTCGACCCAAAACCCTGCAGGAGCTTCTGGAAAGACTCAATCTGGAGGAGCACATTTCGTCTCTGCTGCTGAATGGCTATCAGACAGTGGAGGATCTTCGGGATTTGAAGGAGCAGCATCTTGTCGAGCTGAATATGACTGATCCTGAACACAGACACAGACTGCTGGCGGCAGCAGAAAACCTGCTGGACTCTGAATATAATAATCAGAGCCATGGAGAGACAAATGAAGAACCCAAATCTCCCTCTGAAGAAGAAAAGATCGAACTGAACGACTGTCCCAGAGACTCAGGTTGCTACATCGGATCAGACTGTTCAGACAACAGTAAAGAGGACACAGAGAGCCAGCAAACGCCTCTCAGCCCACCGGCACCCTGAAGCACAACCACAGCCTGTTTATTCAGCACAATCTGCCTCTGATTAGTGCAAAGACTGAAAGCCGCTGACCACAACCTATTTCTGGGCAGTGTAGGGAGGCTTTGTGTTTCAAACTTAATGCATTAAGGTGTTTTGGTCCAGGGTTTGAGTGCTGGATTCTCACATCACGGACACATTGATATTAAAGATGATATGTACTGTACATATGTTGTAAATATGGCGAGAGAGGTGAAGCTTCGCTCTTGTAAACCATTTAAACTTTGCCTTGCAGATGTTATTAGACAAACAACAAACTACTGAGATGCAATATTTTATGCAATAAACATAATCCTTACTA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-135 Is expressed in epiphysis and retinal photoreceptor layer. Orthologous to human SAMSN1 (SAM domain, SH3 domain and nuclear localization signals 1).

Ensembl:

ensembl_id ENSDART00000112457

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005931 lncRNA upstream 382677 38025045 ~ 38034835 (+) True XLOC_002330
TCONS_00005728 lncRNA upstream 527951 37865419 ~ 37889561 (+) True XLOC_002327
TCONS_00005930 lncRNA upstream 688352 37500246 ~ 37729160 (+) False XLOC_002326
TCONS_00004431 lncRNA upstream 688352 37503856 ~ 37729160 (+) True XLOC_002326
TCONS_00004428 lncRNA upstream 843753 37500246 ~ 37573759 (+) False XLOC_002326
TCONS_00005932 lncRNA downstream 4244 38432338 ~ 38433209 (+) True XLOC_002332
TCONS_00004449 lncRNA downstream 321172 38749266 ~ 38760444 (+) False XLOC_002344
TCONS_00005729 lncRNA downstream 321258 38749352 ~ 38751512 (+) False XLOC_002344
TCONS_00005933 lncRNA downstream 321272 38749366 ~ 38759209 (+) True XLOC_002344
TCONS_00004454 lncRNA downstream 655918 39084012 ~ 39087853 (+) True XLOC_002346
TCONS_00004434 mRNA upstream 409142 37981471 ~ 38008370 (+) False XLOC_002329
TCONS_00004433 mRNA upstream 409142 37981471 ~ 38008370 (+) False XLOC_002329
TCONS_00004435 mRNA upstream 411939 37992526 ~ 38005573 (+) False XLOC_002329
TCONS_00004436 mRNA upstream 411939 38000061 ~ 38005573 (+) True XLOC_002329
TCONS_00004432 mRNA upstream 489387 37927100 ~ 37928125 (+) True XLOC_002328
TCONS_00004439 mRNA downstream 84176 38512270 ~ 38521710 (+) True XLOC_002334
TCONS_00004440 mRNA downstream 98402 38526496 ~ 38544426 (+) True XLOC_002335
TCONS_00004442 mRNA downstream 131938 38560032 ~ 38586660 (+) True XLOC_002337
TCONS_00004443 mRNA downstream 165551 38593645 ~ 38602561 (+) True XLOC_002338
TCONS_00004444 mRNA downstream 182647 38610741 ~ 38620514 (+) True XLOC_002339
TCONS_00004421 other upstream 1269728 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 1456822 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004403 other upstream 1748478 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004398 other upstream 1974665 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004384 other upstream 2129009 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004438 other downstream 60614 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004441 other downstream 119995 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004447 other downstream 255572 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004472 other downstream 1264283 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 1332660 39760754 ~ 39760879 (+) True XLOC_002356

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_18522814_18538374.mRNA True 2802 mRNA 0.47 17 CI01000304 18522814 ~ 18538736 (+)