RNA id: TCONS_00005932


Basic Information

Item Value
RNA id TCONS_00005932
length 471
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_002332
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 38432338 ~ 38433209 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCGATTTTGTTTCAAGATGTTTTGATTGAAATGAAGAGAACATCATTTACTcagaaatataattatatttgtaacattatatttgttttaactcACTTTAAACCACTTGGACGCACCTTTGCTAACAAGTAAAACTGATTTATGGATCCTGTTATCATCATTGACACAATTTTGTTCTGAGTGTGACAGAATACGGCCATGTGTTACCAAAATAAAGTACAATGAAAATAACCGTTCGCAttctaaacaacaaaaaaaaaacaaaacaaaagacgTCAGGACGTAAGGCATCAAAGCAGAACACTGTAGTAGTGAAATACAGTCCAGTGTCAAACAGTCTAAAGTTGTGGTCTATAGTTTGGCGGTATGTCGCGCGGGCGTCATGATGTCATCATGCGTGTACACGTCCAGGCCGTTTCCCGTGAACGCGGAGAGCTCGTCTGTGCTGCCGACACCATTGTTGATCTCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005931 lncRNA upstream 397503 38025045 ~ 38034835 (+) True XLOC_002330
TCONS_00005728 lncRNA upstream 542777 37865419 ~ 37889561 (+) True XLOC_002327
TCONS_00005930 lncRNA upstream 703178 37500246 ~ 37729160 (+) False XLOC_002326
TCONS_00004431 lncRNA upstream 703178 37503856 ~ 37729160 (+) True XLOC_002326
TCONS_00004428 lncRNA upstream 858579 37500246 ~ 37573759 (+) False XLOC_002326
TCONS_00004449 lncRNA downstream 316057 38749266 ~ 38760444 (+) False XLOC_002344
TCONS_00005729 lncRNA downstream 316143 38749352 ~ 38751512 (+) False XLOC_002344
TCONS_00005933 lncRNA downstream 316157 38749366 ~ 38759209 (+) True XLOC_002344
TCONS_00004454 lncRNA downstream 650803 39084012 ~ 39087853 (+) True XLOC_002346
TCONS_00004466 lncRNA downstream 850787 39283996 ~ 39285617 (+) True XLOC_002352
TCONS_00004437 mRNA upstream 4244 38417512 ~ 38428094 (+) True XLOC_002331
TCONS_00004434 mRNA upstream 423968 37981471 ~ 38008370 (+) False XLOC_002329
TCONS_00004433 mRNA upstream 423968 37981471 ~ 38008370 (+) False XLOC_002329
TCONS_00004435 mRNA upstream 426765 37992526 ~ 38005573 (+) False XLOC_002329
TCONS_00004436 mRNA upstream 426765 38000061 ~ 38005573 (+) True XLOC_002329
TCONS_00004439 mRNA downstream 79061 38512270 ~ 38521710 (+) True XLOC_002334
TCONS_00004440 mRNA downstream 93287 38526496 ~ 38544426 (+) True XLOC_002335
TCONS_00004442 mRNA downstream 126823 38560032 ~ 38586660 (+) True XLOC_002337
TCONS_00004443 mRNA downstream 160436 38593645 ~ 38602561 (+) True XLOC_002338
TCONS_00004444 mRNA downstream 177532 38610741 ~ 38620514 (+) True XLOC_002339
TCONS_00004421 other upstream 1284554 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 1471648 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004403 other upstream 1763304 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004398 other upstream 1989491 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004384 other upstream 2143835 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004438 other downstream 55499 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004441 other downstream 114880 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004447 other downstream 250457 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004472 other downstream 1259168 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 1327545 39760754 ~ 39760879 (+) True XLOC_002356

Expression Profile

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