RNA id: TCONS_00046243


Basic Information

Item Value
RNA id TCONS_00046243
length 726
lncRNA type retained_intron
GC content 0.37
exon number 4
gene id XLOC_023386
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 18448108 ~ 18467064 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACTACTGTCTGCTGAGGACAACACACAACACTGAAACCATGCACTCCATAAGAAATTTCTTCTGTGGCCAGTGGAGCTCTTCAGTACGTCTGGATGAAAAAACAGTCATTATCACAGGAGCGAATACAGGCATTGGCAAAGAGACAGCTAGAGACCTTGCGAGAAGagGGGCGAGAGTCATCATGGCCTGTCGAGACCTCGAGAAGGCAGAGGCTGCCAGAAGAGAATTAATGGACAATTCTGCAAACCAAAACATTGTGGTGAAAAAACTTGATTTAGCCGATACCAAATCCATCAAAGCATTTGCAGAGCTCATAAACAAGGaagaaaagcAAGTCAATATTCTGATCAATAATGCTGGAATCATGATGTGCCCATATTCAAAAACAGCGGATGGCTTTGAGATGCAGTTTGGAGTAAACCATTTaggtaaaagcatttttttgctatttcatttatgtattacaataaaaagtgACAATATCTATCTGTTCCAAACACAATTAGACATGTTAAATCATGAAACATGAGCTACAAACATGTTAAAGTTTAAATGAAGTTAGGAAGATTTTTGGACAAGCTATTTTTGGACAGAAATCTTATAAATGCACAGGATTTACAGTCACATTAAGTCCATTTAAAACATCATTGCACAATGAACGTATTTATTTATACGTATACACATAAAAAGTGTTttgagtgtttaaaaaaaaaatagaaaatg

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-387 No description available

Ensembl:

ensembl_id ENSDART00000144063

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046239 lncRNA downstream 14071 18444191 ~ 18446604 (-) False XLOC_023385
TCONS_00046240 lncRNA downstream 14071 18445687 ~ 18446604 (-) True XLOC_023385
TCONS_00046238 lncRNA downstream 15596 18444191 ~ 18445079 (-) False XLOC_023385
TCONS_00046852 lncRNA downstream 438461 18021574 ~ 18022214 (-) False XLOC_023384
TCONS_00046851 lncRNA downstream 438461 18021574 ~ 18022214 (-) True XLOC_023384
TCONS_00046254 lncRNA upstream 93215 18560253 ~ 18568486 (-) False XLOC_023389
TCONS_00046267 lncRNA upstream 1241497 19708535 ~ 19709047 (-) False XLOC_023394
TCONS_00046853 lncRNA upstream 1491878 19958916 ~ 19962882 (-) False XLOC_023395
TCONS_00046854 lncRNA upstream 1493834 19960872 ~ 19962882 (-) True XLOC_023395
TCONS_00046271 lncRNA upstream 1543544 20010582 ~ 20012032 (-) True XLOC_023396
TCONS_00046237 mRNA downstream 14071 18444189 ~ 18446604 (-) False XLOC_023385
TCONS_00046235 mRNA downstream 281140 17421722 ~ 18179535 (-) True XLOC_023382
TCONS_00046232 mRNA downstream 568290 17417150 ~ 17892385 (-) False XLOC_023382
TCONS_00046244 mRNA upstream 2728 18469766 ~ 18477672 (-) False XLOC_023387
TCONS_00046246 mRNA upstream 3129 18470167 ~ 18477673 (-) False XLOC_023387
TCONS_00046248 mRNA upstream 18828 18485866 ~ 18510631 (-) True XLOC_023388
TCONS_00046251 mRNA upstream 53364 18520402 ~ 18685009 (-) False XLOC_023389
TCONS_00046252 mRNA upstream 53364 18520402 ~ 18685009 (-) False XLOC_023389
TCONS_00046242 other downstream 4091 18453172 ~ 18456584 (-) False XLOC_023386
TCONS_00046236 other downstream 913806 17546753 ~ 17546869 (-) True XLOC_023383
TCONS_00046223 other downstream 1321561 17136749 ~ 17139114 (-) True XLOC_023377
TCONS_00046216 other downstream 1480947 16971104 ~ 16979728 (-) True XLOC_023371
TCONS_00046210 other downstream 1560551 16896808 ~ 16900124 (-) False XLOC_023369
TCONS_00046245 other upstream 3128 18470166 ~ 18485491 (-) False XLOC_023387
TCONS_00046247 other upstream 6743 18473781 ~ 18485411 (-) True XLOC_023387
TCONS_00046255 other upstream 93392 18560430 ~ 18598641 (-) True XLOC_023389
TCONS_00046256 other upstream 158214 18625252 ~ 18625367 (-) True XLOC_023390
TCONS_00046263 other upstream 442979 18910017 ~ 18919557 (-) True XLOC_023392

Expression Profile

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