RNA id: TCONS_00046252


Basic Information

Item Value
RNA id TCONS_00046252
length 4705
RNA type mRNA
GC content 0.46
exon number 29
gene id XLOC_023389
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 18520402 ~ 18685009 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGGCGGGTAATGTCAACCCGTTTAACGTGAGTGATTCGGAGGAGGAAGCGGAGCAGAGGCAGGATGGCGCGGACACTGAGCGCAGCCCGAGTGATGAAGCGCAAGGCCACAGCCTCGGTCCCTTCTCTCCGCCGGCGTACTCCGATCCAGCCGCCCTGCTGTCCAGCAACCGCACCAGCCCGAGTGTGGACGGGATCCCCGCCTCGGCGGCGGCTGTGTCCGGGATCGGCGCGGAGACGCGGGTGTCGCTAGATGCGATCGCCGCGCAGCTGCTCCGGGATCAGTACATCCTCACGGCCCTGGAGCTGCACACCGAGCTCCTTGAAGCCGGACGCGAGCTGCCGCGCCTGCGGGATTATTTCTCCAATCCAGGCAACTTCGAGAGACAGAGCGGAACCCCACCCGCGTGCAAAGAGCAAGGtgtcggtcctggaggtccgctGAaTCGAGCCGGCAGCATCAGCACGTTAGACTCCTTGGATTTTGCACGTTATTCAGATGATGGCAACAGGGAGTCGGATGAAAGAGTTGCAGAATGCGAGATTGCCTCTCAAGAGAGAAAGAATTACAAATCCAGTCCTGAAACCCAGGAGCCTATTCGCCCCCTTGAAAAGAGAGCCTTAAATTTTTTAGTTAATGAATATTTATTGAAAAACGAATACAAGTTAACGTCCATCACATTCTCCGATGAAAACGATGATCAGGATTTCGAGTTGTGGGACGACGTTGGTTTAAACATTCCCAAACCTCCAGATCTGCTGCAGCTCTACAGAAACTGTGGGAACAGTCAGCCGTTGCACCGTGACAACGTAGATGTGGCGGTCAGTGTTGACCCGAGTGACTTGCCAGGAGACTATTTCACCCAGGAGCCTGTGCAGCAAACTGATGTCATACAGcaacaacagcagcagGAAGTGGTCCAGGAGCTGGAATATCAGATCAGCCTGCTGAACAGTGAGAAACAGAGTCTGGCTGAACAGATTAAGAAGCTTCAGAGtgaTATTCAGGCACTTCAGAGAAATGTTTCATCAGAACCCACGGCTGGAGTGAAGTCAACTCCGTCTAAAGAAAACCCTAAATGTGATAAGCCCCCACTTGACAATGGACAGTATTTGGACATACGAGGGGTCACAGAAACGGACAGCTCTTCAGACACTACTAAAACCTCAACCTCTACCACTATTGCTACTGACTGCACTGAAAACTCCACTACTGCTACACAACCTCACAGCAAACTGAAGGCCAATGGTCAGCAGAGTAAAAGCTCTGTCCAGTTTGACCAGCCCAACAGAAAGCTGTCTCCGGCCTTCCACCAAGCACTTTTGTCCTTCTGTCGAATGTCTGCTGACAGCAGGCTGGGCTCAGAGGTGTCTCGAATCGCTGACAGTGAGCAGAGTGTTATGCTCATGCTGGGCCGCTGCTTGCCACACATCGTACCCAATGTCCTGTTAGCCAAGAGAGAGAGAATGGTTGTGCACCTCTGTCAGGAGCTGATTCCCCTGATTTTGTGTACGGCCTGCCTGCATCCCGAGCCCAAAGAAAGAGATCAACTCTTGCACATCCTCTTTAATCTTATCAAGAGACCTGATGATGAGCAGAGACAGATGATTTTGACGGGGTGTGTGGCGTTTGCCCAACATGTGGGTCCGACACGGGTGGAAGCTGAGCTCCTGCCTCAGTGCTGGGAACAGATCAACCACAAGTATCCAGAGAGAAGACTTCTGGTGGCAGAAGCATGTGGAGCCCTGGCCCCTTATTTACCAAAGGAAATCCGAAGCTCCCTGGTTTTGTCTATGCTTCAGCAAATGTTGGCAGATGATAAAGCTGATATGGTCCGAGAGGCTGTGGTGAAAAGTTTAGGAGTTATAATGGGTTATATTGATGATCCAGACAAATACTCCCAGGGCTTTGAGCTGATGCTGTTGTCTCTGGGTGACCCATCGGAGCGGGTGGTCAGTGCCACCCACCAAGTGTTCATTCCTGCCTTTGCTGCCTGGTGCACAGAACTGGGCAACTTACAGTCCCAGCTCATTCCTTCCCTCCTCACACGCATCGAGAAGCTCCTCAAGCAGGGTGAATATGGCCTTGATGAACACAAGCTGCACATGTATCTGTCAGCACTTCAGTCCCTCATCCCATCTCTGTTTGCGGTGCTGCTTCAAAACGCCCCCTTCACCAGTCGAGTTAAACTACAGGGCGACGTGCCTCCAATCGAAGTGACCCGGTTTCCTCGTCCAGCCTCCCCGTTGCAGGACGTGGCCACCATCGTGGGCAGTCGAGAGCAGTTGGCAGTTCTTCTACACTTATATGATCATCAGCTTCAGCATGAAGGAACTACAGGATGGGACAGTTTGCTCTGGGTGGTCAACCAGTTTTTACCACAGATAATAGACATTGTCGGCCGCATTAACGTCACCTCCTCCACCTGTGTACACGAGTTTTCCAGATTCTTCTGGAGATTATGTCGGACATTTGGGAAAATCTTTACCAACACTAAGGTAAAACCTCAATTCCAAGAAATCCTGCGGCTATCAGAGGAGAATGTGGATGCCACCGCAGGAAATGGTATCCTTACAAAGGCTACGGTGCCCATCTATGCAACCGGAGtcctgacatgctacaatcagGAGGAGGATCGCAAGCTCCTGGTGGGTTTTCTTGAGGATGTCATGACCACTTTATCTCTCTCCCATGCTCCTCTCGACAGTCTGAAGGCTTCATTTGTAGAGCTGGGGGCAAACCCGGCCTATCATGAGCTACTCCTGACAGTGCTGTGGTATGGAGTGGTCCATACATCTGCACTGGTCCGCTGCACTGCTGCACGCATGTTTGAGCGGGTTCTTCGAGGCATGAGCGAAGCCTTAATTGACAAGCGAGTAGCCCCGGCCCTTATTACCTTGTGCAGTGGTCCTGAATTCTCGGTGAGGATATCTACGATACCTGCCTTCGGGACAATTATGGAAACTGTTACGCAAAAAGAGCTGCTAGAAAGAGTGAAAATGCAGCTGGCCTCTTTTCTGGAAGACCCCCAGTATCAGGACCAGCATTCTTTGCACATGGAAATTATCAAGACATTTGGAAGAGTAGGACCCAACGCAGAGCCCCGCTTCAGAGATGAATTTGTTCTTCCTCATTTGCACAAACTGGCTCTGTGCAACAACCAGCAGACGGTTGAGAGTAAAAGAATTGACATTGCCACTCAACTCTTCGAGGCCTACAGCGCTTTATCCTGCTGTTTTATTTCAGAAGAACTCATGGTGAATCATTTCCTGCCTGGACTGAGGTGTTTAAGGACTGATATGGAGCAGCTCTCTCCAGAGCATGAGGTTATTCTCAGCTCCATGATAAAGGAGTGTGAAATAAAGGTGGAGAATAAAGCCATTGGAGAGGCACAAGGGTCCATTTCTATTGCTGCGAGTCTGGTGGGTGAAGATGCAAAGACCAAGTTTTTAAGTAAGATGGGCCAGTTGACAACCTCAGGTGCCATGCTGGCCAACGTTTTCCAGAGAAAGAAATGAGATCTGCTTGGGCTGTTTCTCCATTTTTCTGGGATCTCCTACTTGAAGTTCAGTCGTctgcctttttttctgtttttttttttttgtttgttttgaccaTGGTTGATTTAATAGTCtgtatttttaacatatttatgtCTTAAATTTATTCCAGCCTCCAAAGATATTTGCACTCATATTTCAGtgttctacatttttttattttgattttatttcagaGGCGTATTTACATcactacacttttttttgttctttctttcttcttttgggACAATGTGAACTTTATGAAATCGAAATGATTCCTTCCTCGTCTCGTTGTCTTTTATGTGTTGCTGTGTCTTTGAAGAATATTTTCTAAAAGTGTGTAAAGTTGTCCAGGGTTTTGTTTCTCTAATTTTGGATATGCTCCAAtggtaaataactgtaaaatacagtgAACTGAGAGAACAGTACCCAATATCATGTATATTTGAAAATTCGTGTCATAAGATAATAAAAAGCAAAGACCACTTGTGTACTTATGTACCTCTGATGAAAAGTTTCTTTTGAACTATAAATTCACCTGTTGAGCACCTTGCCTTTCAGTATACCATATTGGTTCTGCTTGGTTATTATTTGGGAGAATAAGAGCAATCCCgcactgcaaaaataaataaatgtctcaacttaaaattttaaggcaccaaacttcaggacatttttgagtttactcggcTTTCAACCCAGTTATTGCACTTGACTTGGTTTATGGAAACTCAAAAATGTTCTCAAGTTTGTTGCCCTAAAAATTTAAggttgtaaacttttttttttttaacagtgtgggaAGCATCcattatttgtttgattgtttgttttgcaAACTAACTTCACTGTCAAAAATGCAGGTTTccacacacaattcattcatgttatcaaacaaattgattaagttcacttaaatttaggtggattgaacataatatAACTAAGTTGTCctcaaaaaaatctcaagaattgttgttttagcttattttaaataagtagtatgAAGAAGtagcagaaatatatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatgtatgtatgtatgtatgtatgtatata

Function

GO:

id name namespace
GO:0032367 intracellular cholesterol transport biological_process
GO:0006869 lipid transport biological_process
GO:0005768 endosome cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0055037 recycling endosome cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1507 Predicted to be involved in intracellular cholesterol transport. Predicted to act upstream of or within lipid transport. Predicted to be located in recycling endosome and trans-Golgi network. Orthologous to human RELCH (RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing).

Ensembl:

ensembl_id ENSDART00000181642

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046243 lncRNA downstream 53364 18460675 ~ 18467038 (-) True XLOC_023386
TCONS_00046239 lncRNA downstream 73798 18444191 ~ 18446604 (-) False XLOC_023385
TCONS_00046240 lncRNA downstream 73798 18445687 ~ 18446604 (-) True XLOC_023385
TCONS_00046238 lncRNA downstream 75323 18444191 ~ 18445079 (-) False XLOC_023385
TCONS_00046851 lncRNA downstream 498188 18021574 ~ 18022214 (-) True XLOC_023384
TCONS_00046267 lncRNA upstream 1023526 19708535 ~ 19709047 (-) False XLOC_023394
TCONS_00046853 lncRNA upstream 1273907 19958916 ~ 19962882 (-) False XLOC_023395
TCONS_00046854 lncRNA upstream 1275863 19960872 ~ 19962882 (-) True XLOC_023395
TCONS_00046271 lncRNA upstream 1325573 20010582 ~ 20012032 (-) True XLOC_023396
TCONS_00046275 lncRNA upstream 1375682 20060691 ~ 20062056 (-) False XLOC_023398
TCONS_00046248 mRNA downstream 9771 18485866 ~ 18510631 (-) True XLOC_023388
TCONS_00046246 mRNA downstream 42729 18470167 ~ 18477673 (-) False XLOC_023387
TCONS_00046244 mRNA downstream 42730 18469766 ~ 18477672 (-) False XLOC_023387
TCONS_00046241 mRNA downstream 53338 18448108 ~ 18467064 (-) False XLOC_023386
TCONS_00046237 mRNA downstream 73798 18444189 ~ 18446604 (-) False XLOC_023385
TCONS_00046257 mRNA upstream 51907 18736916 ~ 18877118 (-) False XLOC_023391
TCONS_00046258 mRNA upstream 53238 18738247 ~ 18876877 (-) False XLOC_023391
TCONS_00046259 mRNA upstream 106204 18791213 ~ 18809433 (-) True XLOC_023391
TCONS_00046260 mRNA upstream 195245 18880254 ~ 18919649 (-) False XLOC_023392
TCONS_00046261 mRNA upstream 198620 18883629 ~ 18919571 (-) False XLOC_023392
TCONS_00046245 other downstream 34911 18470166 ~ 18485491 (-) False XLOC_023387
TCONS_00046247 other downstream 34991 18473781 ~ 18485411 (-) True XLOC_023387
TCONS_00046242 other downstream 63818 18453172 ~ 18456584 (-) False XLOC_023386
TCONS_00046236 other downstream 973533 17546753 ~ 17546869 (-) True XLOC_023383
TCONS_00046223 other downstream 1381288 17136749 ~ 17139114 (-) True XLOC_023377
TCONS_00046263 other upstream 225008 18910017 ~ 18919557 (-) True XLOC_023392
TCONS_00046264 other upstream 603645 19288654 ~ 19288768 (-) True XLOC_023393
TCONS_00046272 other upstream 1347322 20032331 ~ 20054257 (-) False XLOC_023397
TCONS_00046273 other upstream 1347331 20032340 ~ 20039150 (-) True XLOC_023397
TCONS_00046277 other upstream 1502307 20187316 ~ 20187430 (-) True XLOC_023401

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00019493 True 3087 mRNA 0.49 27 CM030124.1 24108962 ~ 24149017 (+)