RNA id: TCONS_00046267


Basic Information

Item Value
RNA id TCONS_00046267
length 399
lncRNA type retained_intron
GC content 0.48
exon number 2
gene id XLOC_023394
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 19707609 ~ 19719240 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTTTCTTCCTTTGATAGCTCACCAAAAACGGTACCCAAGAGTCTGAAGAAGCTGAAAAGTTAACTGTCGATGATATCCCAGAGGATGAAATTGACCTCAGTGGAGTAAATGTGGATGACGGCTCCTTCCTGCATCCATACCCCTCAAAGAAAAGGTACGCCATCCTTAAAGCTGCTGGTGTGAAGAAAATCGATAGAGAAGAGAAACGTCAACTTCATGAGCTGCGGACATCGAGAGAAGACTGCGGATGTGACTGTCAAGGCTTCTGTGAGCCAGAGACCTGCAGCTGTAGTTTGGCTGGGATCAAATGTCAGATGGACCACTCATCCTTCCCATGTGGCTGCACTAAAGATGGCTGTGGGAACACACAAGGTCGCATCGAGTTCAACTCTAGCCG

Function

GO:

id name namespace
GO:0021536 diencephalon development biological_process
GO:0030901 midbrain development biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1515 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Acts upstream of or within diencephalon development and midbrain development. Predicted to be active in nucleus. Is expressed in several structures, including anterior neural rod; axial mesoderm; axis; nervous system; and trunk. Orthologous to human CSRNP1 (cysteine and serine rich nuclear protein 1).

Ensembl:

ensembl_id ENSDART00000133889

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046254 lncRNA downstream 1140049 18560253 ~ 18568486 (-) False XLOC_023389
TCONS_00046243 lncRNA downstream 1241497 18460675 ~ 18467038 (-) True XLOC_023386
TCONS_00046239 lncRNA downstream 1261931 18444191 ~ 18446604 (-) False XLOC_023385
TCONS_00046240 lncRNA downstream 1261931 18445687 ~ 18446604 (-) True XLOC_023385
TCONS_00046238 lncRNA downstream 1263456 18444191 ~ 18445079 (-) False XLOC_023385
TCONS_00046853 lncRNA upstream 249869 19958916 ~ 19962882 (-) False XLOC_023395
TCONS_00046854 lncRNA upstream 251825 19960872 ~ 19962882 (-) True XLOC_023395
TCONS_00046271 lncRNA upstream 301535 20010582 ~ 20012032 (-) True XLOC_023396
TCONS_00046275 lncRNA upstream 351644 20060691 ~ 20062056 (-) False XLOC_023398
TCONS_00046274 lncRNA upstream 351644 20060691 ~ 20063050 (-) True XLOC_023398
TCONS_00046260 mRNA downstream 788886 18880254 ~ 18919649 (-) False XLOC_023392
TCONS_00046261 mRNA downstream 788964 18883629 ~ 18919571 (-) False XLOC_023392
TCONS_00046262 mRNA downstream 788973 18895547 ~ 18919562 (-) False XLOC_023392
TCONS_00046257 mRNA downstream 831417 18736916 ~ 18877118 (-) False XLOC_023391
TCONS_00046258 mRNA downstream 831658 18738247 ~ 18876877 (-) False XLOC_023391
TCONS_00046269 mRNA upstream 297664 20006711 ~ 20016817 (-) False XLOC_023396
TCONS_00046270 mRNA upstream 301005 20010052 ~ 20016817 (-) False XLOC_023396
TCONS_00046276 mRNA upstream 355041 20064088 ~ 20152965 (-) True XLOC_023399
TCONS_00046278 mRNA upstream 479867 20188914 ~ 20192996 (-) True XLOC_023402
TCONS_00046279 mRNA upstream 484975 20194022 ~ 20208474 (-) True XLOC_023403
TCONS_00046264 other downstream 419767 19288654 ~ 19288768 (-) True XLOC_023393
TCONS_00046263 other downstream 788978 18910017 ~ 18919557 (-) True XLOC_023392
TCONS_00046256 other downstream 1083168 18625252 ~ 18625367 (-) True XLOC_023390
TCONS_00046255 other downstream 1109894 18560430 ~ 18598641 (-) True XLOC_023389
TCONS_00046245 other downstream 1223044 18470166 ~ 18485491 (-) False XLOC_023387
TCONS_00046272 other upstream 323284 20032331 ~ 20054257 (-) False XLOC_023397
TCONS_00046273 other upstream 323293 20032340 ~ 20039150 (-) True XLOC_023397
TCONS_00046277 other upstream 478269 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046286 other upstream 740980 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other upstream 761907 20470954 ~ 20471090 (-) True XLOC_023407

Expression Profile

//