RNA id: TCONS_00046271


Basic Information

Item Value
RNA id TCONS_00046271
length 210
lncRNA type retained_intron
GC content 0.40
exon number 2
gene id XLOC_023396
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20006711 ~ 20016817 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aatatattaaatatttaattttatttattacatgtttGGCAGGATTCTCCCTGAGTCTGCGAGATGGCTTCTGACACAAGGAAAACTAGACAGTGCCAAGAGAGAGATCCTCAAAGCTGCCCGAATTAATGGCAGGAAGGTGTCTGAAAATCTGCTTGATAAgATGGAAGCAGAGAACACAGCCAAATCAAGCACCATGATAGACCTGTT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-532 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; gill; heart; pleuroperitoneal region; and skeletal muscle. Orthologous to several human genes including SLC22A13 (solute carrier family 22 member 13).

Ensembl:

ensembl_id ENSDART00000164243

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046853 lncRNA downstream 47700 19958916 ~ 19962882 (-) False XLOC_023395
TCONS_00046854 lncRNA downstream 47700 19960872 ~ 19962882 (-) True XLOC_023395
TCONS_00046267 lncRNA downstream 301535 19708535 ~ 19709047 (-) False XLOC_023394
TCONS_00046254 lncRNA downstream 1442096 18560253 ~ 18568486 (-) False XLOC_023389
TCONS_00046243 lncRNA downstream 1543544 18460675 ~ 18467038 (-) True XLOC_023386
TCONS_00046275 lncRNA upstream 48659 20060691 ~ 20062056 (-) False XLOC_023398
TCONS_00046274 lncRNA upstream 48659 20060691 ~ 20063050 (-) True XLOC_023398
TCONS_00047174 lncRNA upstream 169965 20181997 ~ 20185025 (-) True XLOC_023400
TCONS_00047175 lncRNA upstream 437995 20450027 ~ 20501301 (-) False XLOC_023407
TCONS_00046288 lncRNA upstream 438583 20450615 ~ 20470991 (-) False XLOC_023407
TCONS_00046268 mRNA downstream 291342 19708869 ~ 19719240 (-) True XLOC_023394
TCONS_00046265 mRNA downstream 292505 19707609 ~ 19718077 (-) False XLOC_023394
TCONS_00046266 mRNA downstream 292505 19707612 ~ 19718077 (-) False XLOC_023394
TCONS_00046261 mRNA downstream 1091011 18883629 ~ 18919571 (-) False XLOC_023392
TCONS_00046276 mRNA upstream 52056 20064088 ~ 20152965 (-) True XLOC_023399
TCONS_00046278 mRNA upstream 176882 20188914 ~ 20192996 (-) True XLOC_023402
TCONS_00046279 mRNA upstream 181990 20194022 ~ 20208474 (-) True XLOC_023403
TCONS_00046280 mRNA upstream 202386 20214418 ~ 20321012 (-) False XLOC_023404
TCONS_00046281 mRNA upstream 217208 20229240 ~ 20320480 (-) True XLOC_023404
TCONS_00046264 other downstream 721814 19288654 ~ 19288768 (-) True XLOC_023393
TCONS_00046263 other downstream 1091025 18910017 ~ 18919557 (-) True XLOC_023392
TCONS_00046256 other downstream 1385215 18625252 ~ 18625367 (-) True XLOC_023390
TCONS_00046255 other downstream 1411941 18560430 ~ 18598641 (-) True XLOC_023389
TCONS_00046247 other downstream 1525171 18473781 ~ 18485411 (-) True XLOC_023387
TCONS_00046272 other upstream 20299 20032331 ~ 20054257 (-) False XLOC_023397
TCONS_00046273 other upstream 20308 20032340 ~ 20039150 (-) True XLOC_023397
TCONS_00046277 other upstream 175284 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046286 other upstream 437995 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other upstream 458922 20470954 ~ 20471090 (-) True XLOC_023407

Expression Profile

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