RNA id: TCONS_00046279


Basic Information

Item Value
RNA id TCONS_00046279
length 2045
RNA type mRNA
GC content 0.46
exon number 14
gene id XLOC_023403
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20194022 ~ 20208474 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCACGTGCGTGCGCGCGTCTTCATGTTTGGTAAGCCCACAAGCACGCGCCTGTTACTAAACGTGCTACTCAGTCGCTTTCCTGGTAAACTGACCGCTCTGCAGTGTTCACAGGCCGGTCTTCATGATGTCCGCTTCCCGTACAGTCATTTGTCTGCTGAGGAACGATCTGCGGCTGCATGATAACGAGGTGTTTCACTGGGCTCAGAGGAATGCAGAGCACATAATACCGCTGTACTGCTTCGACCCGCGCCATTACCAGGGCACATATCACTACAACTTCCCCAAAACTGGCCCCTTCCGGCTGCGCTTCCTCCTAGACAGTGTAAAAGACCTGAGGGCCTTGCTGAAGAAACACGGCAGTACACTGTTGGTCAGACAGGGAAAGCCGGAGGATGTTGTCTGTGAATTGATTAAGCAGCTGGGTTCAGTCTCTACTGTGGCGTTTCATGAAGAGGTGGCGTCAGAGGAGAAGAGTGTGGAGGAGAAGCTGAAAGAAATCTGCTGCCAAAACAAAGTCAGAGTTCAGACCTTCTGGGGATCCACACTTTACCACAGAGATGATCTGCCATTCAGTCACATTGGAGGGTTACCTGATGTTTACACACAGTTCAGAAAGGCAGTGGAGGCTCAGGGACGAGTGCGACCGGTGCTTTCCACTCCAGAACAGGTGAAATCCCCCCCTTCTGGACTGGAGGAGGGTCCCATTCCTACATTTGACAGCCTAGGACAGACAGAGCCATTGGACGACTGTCGTTCTGCCTTCCCGTGCCGTGGTGGAGAAACTGAGGCTCTTGCTAGACTGAAGCATTATTTCTGGGATACAAATGCAGTTGCAACTTATAAAGAGACCCGGAATGGAATGATTGGAGTGGACTTTTCCACAAAGTTTTCTCCTTGGCTCGCATTGGGCTGCATCTCACCCAGATACATTTATGAGCAGATTAAAAAGTACGAAGTCGAACGAACCGCCAACCAAAGCACCTACTGGGTGATATTTGAACTTCTGTGGAGAGATTACTTTAAGTTTGTGGCTTTGAAATACGGAAACCGAATCTTTTATATGAACGGTCTGCAAGACAAGCATGTGCCATGGAATACAGATATGAAGATGTTTGATGCATGGAAAGAGGGAAGAACTGGCGTGCCATTTGTAGATGCCAACATGAGAGAGCTCGCGCTCACTGGATTTATGTCCAACAGAGGACGTCAAAATGTGGCCAGCTTTCTGACCAAAGACCTGGGCTTGGACTGGAGACTTGGCGCCGAATGGTTTGAATACCTGCTGGTGGATCATGACGTCTGCAGCAACTATGGAAACTGGCTGTACAGCGCAGGAATAGGAAACGACCCAAGAGAAAACAGGAAGTTTAATATGATCAAACAAGGACTGGATTATGACAATAATGGCGACTATGTCCGTCAGTGGGTTCCTGAGCTTCGAGGTATTAAAGGTGGAGATGTTCACACACCATGGACCCTCAGCAACTCAGCGCTGTCACACGCACAGGTCTCACTCAACCAAACATACCCTTGTCCCATCATCACCGCACCCGAGTGGAGTCGACACGTCAATAACAAATCATCTGGCTCGTCATCATCTAAAGGAAGAAAGGGTTCATCTTACACAGCAAGACAACACAAAGACAGAGGCATTGACTTCTACTTCTCCAAGAACAAACATTTTTGAGGAGAAGATGAGGTGAAATTGCACTTTTACTCAAGTGACACTGCAGCATCTGCTCAGGCCACAGTTTACATTGCTGAATGAGGAAGAGGAAATCGAAAAACAGTGTGGTTTTATGTTGCTCTTTCTGAATCTGTTTTCATACACATACAGAAATGGCtacttgctttcttttttttgttcttaCAAAAACTGTTACTctatttttcatgtatttatttgtattgcattAAGTTCAGTATGACAGTTTTAGTGGTAGTATCCCTTAAGATGTCCTTGTTTAGTACAAAAGTAAGATCATTTATAATCATTTTTCATTATGCTCTACCTAAAAATAAAACCGTTGGGATTTTGTTGG

Function

GO:

id name namespace
GO:0018298 protein-chromophore linkage biological_process
GO:0000719 photoreactive repair biological_process
GO:0006281 DNA repair biological_process
GO:0003904 deoxyribodipyrimidine photo-lyase activity molecular_function
GO:0003913 DNA photolyase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003684 damaged DNA binding molecular_function
GO:0071949 FAD binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040617-2 Enables damaged DNA binding activity; deoxyribodipyrimidine photo-lyase activity; and flavin adenine dinucleotide binding activity. Acts upstream of or within photoreactive repair.

Ensembl:

ensembl_id ENSDART00000139329

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047174 lncRNA downstream 8997 20181997 ~ 20185025 (-) True XLOC_023400
TCONS_00046274 lncRNA downstream 130972 20060691 ~ 20063050 (-) True XLOC_023398
TCONS_00046275 lncRNA downstream 131966 20060691 ~ 20062056 (-) False XLOC_023398
TCONS_00046271 lncRNA downstream 181990 20010582 ~ 20012032 (-) True XLOC_023396
TCONS_00046854 lncRNA downstream 231140 19960872 ~ 19962882 (-) True XLOC_023395
TCONS_00047175 lncRNA upstream 241553 20450027 ~ 20501301 (-) False XLOC_023407
TCONS_00046288 lncRNA upstream 242141 20450615 ~ 20470991 (-) False XLOC_023407
TCONS_00046290 lncRNA upstream 242364 20450838 ~ 20469290 (-) False XLOC_023407
TCONS_00046291 lncRNA upstream 262304 20470778 ~ 20501301 (-) False XLOC_023407
TCONS_00046315 lncRNA upstream 928701 21137175 ~ 21139396 (-) False XLOC_023418
TCONS_00046278 mRNA downstream 1026 20188914 ~ 20192996 (-) True XLOC_023402
TCONS_00046276 mRNA downstream 41057 20064088 ~ 20152965 (-) True XLOC_023399
TCONS_00046269 mRNA downstream 177205 20006711 ~ 20016817 (-) False XLOC_023396
TCONS_00046270 mRNA downstream 177205 20010052 ~ 20016817 (-) False XLOC_023396
TCONS_00046268 mRNA downstream 474782 19708869 ~ 19719240 (-) True XLOC_023394
TCONS_00046280 mRNA upstream 5944 20214418 ~ 20321012 (-) False XLOC_023404
TCONS_00046281 mRNA upstream 20766 20229240 ~ 20320480 (-) True XLOC_023404
TCONS_00046282 mRNA upstream 124505 20332979 ~ 20369604 (-) False XLOC_023405
TCONS_00046283 mRNA upstream 124633 20333107 ~ 20359350 (-) False XLOC_023405
TCONS_00046284 mRNA upstream 150656 20359130 ~ 20369760 (-) True XLOC_023405
TCONS_00046277 other downstream 6592 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046272 other downstream 139765 20032331 ~ 20054257 (-) False XLOC_023397
TCONS_00046273 other downstream 154872 20032340 ~ 20039150 (-) True XLOC_023397
TCONS_00046264 other downstream 905254 19288654 ~ 19288768 (-) True XLOC_023393
TCONS_00046263 other downstream 1274465 18910017 ~ 18919557 (-) True XLOC_023392
TCONS_00046286 other upstream 241553 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other upstream 262480 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046297 other upstream 439001 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046316 other upstream 930848 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046357 other upstream 1754578 21963052 ~ 21963168 (-) True XLOC_023437

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_03802116_03809432.mRNA True 1933 mRNA 0.46 13 CI01000018 3801686 ~ 3809432 (-)
bowfin (Amia calva) AMCG00019136 True 2075 mRNA 0.49 14 CM030124.1 5269238 ~ 5278716 (-)