RNA id: TCONS_00046285


Basic Information

Item Value
RNA id TCONS_00046285
length 2698
RNA type mRNA
GC content 0.49
exon number 20
gene id XLOC_023406
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20418959 ~ 20444844 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTGGACAGTAAAAGCCTTTCCCTGATCAGCACAAAGAGgaaaacacaattcattcatacaGTACAACACCAACCTCAACAACACCTCTGTCTGACACACACAGATAATTCAAGCATTGAGATTTCTTCTCAGAGTTCAGCAGAATGACTGAAGCCCACGATTTGTTTAAGAACATCCAGCGAAAGCCTGGCCTGCAGATCTGGACCATCAATAAAATGCAGATGGTCGCTGTTCCAGAGCAAGCATTTGGGAATTTTTTTGAGGGCGATTGCTACATCATACTTAATGTGAGCAACAACCCTGCACAATCCATTGACATCCATTACTGGATAGGTAACAGTTCCTCTCAGGATGAGCAGGGAGCAGCAGCCATCTATGTGACCCAGCTGGACGAGAATTTCGGCGGCAGTCCTGTTCAATACCGTGAGGTCCAGGGCCATGAATCTGTGAAATTCAAAAGCTACTTCAAGAATGGCCTCATTTATAAAAAAGGTGGAGTAGCATCAGGATTCACTCATGTGGAGACCAACGTGTACAATATTCAGCGCCTGCTTCACGTCAAAGGAACCAAACATGTGACTGGCAGAGAGGTGGAGGTGTCCTGGAACAGTTTTAATCTAGGGGACGTTTTCCTGCTAGACTTGGGAAAAGCTATAATACAATGGAATGGTCCTCAAAGCAACAGACAAGAGAAGTTAAAGgCTGTTATGTTGGCTCAGGACATCAGGGACCGAGAGAGAGGAGGACGGGCTCAGATTGGCGTGATTGAGGGTGCACAGGAGGAAGCTTCTCCTGAGCTAATGAAGGTCATGGTCTCGGTTTTGGGTCAGAGGATTGGTCAAATGAAAGAGGCAATACCTGATGACAAACCAGGCCAAAACCAGATCTCCAATGTCAAACTCTACCAGGTGTCAGACGCCAGTGGTCAGCTGTTGGTACAGGAAGTGGCTGTCAGTCCACTCACCCAGGATCTGCTGTGCTCCTCTGATTGCTATATTTTAGATCAAGGTGGCACCTCGATAATGGTCTGGAAGGGAAAAGGAGCTTCAAATGAAGAGAGGCGCTCGGCGATGGGCCGGGCAGTTGGATTTATAAAAGCAAAGAACTACCCGGCCAGCACTAAAGTGGAGGTCATGAGTGAAGGAGGAGAATCTGCTATGTTTAAACAGCTCTTCAAGTCTTGGACTGAAAAAGGTCAAACTCAAGGCCTGGGAAAGACACACTCAGTAGGAAAGATAGCTAAAGTGGATCAGGTGAAGTTTGACGTCATGGAGCTTCACGCACAGCCGAAACTGGCTGCTCAGGAGCGGATGGTAGACGATGCCTCAGGACAAGTTCAGGTTTGGCGGATCGAGAATCTTGAACTCAAGGAAGTGGATCGAAGCACTTATGGACAGTTTTATGGAGGAGACTGTTATCTAGTTTTGTACACCTACAACAGAGCCAACAAACCTCAGTATATCCTCTACATCTGGCAGGGTCGTCACGCCACACAGGATGAGGTGACGGCATCCGCTTATCAGGCAGTCAATTTGGATAACAAATACAATGGAGCCCCAACACAGGTCCGAGTGGTCATGGGAAAAGAACCCAGACACTTCATGGCCATCTTTAAAGGCCGACTCATCATCTTCGAGGGTGGCACAGGCCGGTCGGGTGTTGTGAACCCTGATCCTGCTGCCAGACTCTTCCAGGTCAGAGGAACACATGAGCTGAACACAAAGGCCACAGAGGTTCCCGCCCGAGCCTCTTCTCTCAACACCAATGACGTCTTTCTGCTCAAAACATATCAGACTGTTTTCCTGTGGTACGGCAAGGGCTGCAGTGGAGATGAGCGAGAGATGGGAAAAGCTGTGGCTGATCTGCTCTCTGGTCAGGATAAGCAGACTGTGATGGAGGGTCAGGAACCAGCTGCTTTCTGGGTGCCTCTGGGAGGAAAAGCTCCATACGCCAGTGACAAGAGACTGGAGGAAGAGGTGTCACTTCATGAGCCCCGTCTGTTCGAGTGCTCCAATCAGACAGGTCGATTCCTCATGACAGAAGTGGCCGACTTTACTCAGGATGACCTGGATGAGGACGACGTCATGCTGCTCGACACCTGGGATGAGATTTTTCTCTGGATTGGTAACTCGGCAAACCAGTATGAGATCCAGGAGTCCAGCAGCAGTGCAGTAGAGTATCTGAAGACTCATCCGGCAGGACGGGACGCCGGGACCCCCATCACCACTGTTAAACAAGGCTACGAGCCGCCAACCTTCACCGGCTGGTTCAACGCCTGGGACGCGCACAAGTGGAGCGGAGGCCTTTCATATGAAGAGATGAAAAGCAAGCTGGGTGATGTTTCACAAATCACTGTGAGTCTCAACAACACAGACTTGAATAAGAAGCCAGGAGGAGGTGTGGGAAACTACAGCGCTCCTGGGGGACCGGGGAGTATACGCTCCCACAATCAGAGGATGTCCAGTGTACAGTTCGGAGATGGGTCTCAAAACAGAGCAAAGCCTTCTGGGATGCAAAATTCAGAGCAGCTTGTTAAAATGCCAAATCAGCTGCCTCAAGGACTGGATCCTGAAAAACGAGAGGAGTATTTGTCTGATGCTGAATTTGAAAATCTCCTGGGCTGCACTCGTGCCAATTTCCAGCGTTTGCCTAAATGGCGTCAAAACGACCTGAAAAAGAAGGCAGGACTATTTTGA

Function

GO:

id name namespace
GO:0007010 cytoskeleton organization biological_process
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081222-1 Predicted to enable actin filament binding activity. Predicted to act upstream of or within actin filament capping and cytoskeleton organization. Orthologous to human VILL (villin like).

Ensembl:

ensembl_id ENSDART00000048940

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047174 lncRNA downstream 233934 20181997 ~ 20185025 (-) True XLOC_023400
TCONS_00046274 lncRNA downstream 355909 20060691 ~ 20063050 (-) True XLOC_023398
TCONS_00046275 lncRNA downstream 356903 20060691 ~ 20062056 (-) False XLOC_023398
TCONS_00046271 lncRNA downstream 406927 20010582 ~ 20012032 (-) True XLOC_023396
TCONS_00046854 lncRNA downstream 456077 19960872 ~ 19962882 (-) True XLOC_023395
TCONS_00047175 lncRNA upstream 5183 20450027 ~ 20501301 (-) False XLOC_023407
TCONS_00046288 lncRNA upstream 5771 20450615 ~ 20470991 (-) False XLOC_023407
TCONS_00046290 lncRNA upstream 5994 20450838 ~ 20469290 (-) False XLOC_023407
TCONS_00046291 lncRNA upstream 25934 20470778 ~ 20501301 (-) False XLOC_023407
TCONS_00046315 lncRNA upstream 692331 21137175 ~ 21139396 (-) False XLOC_023418
TCONS_00046284 mRNA downstream 49199 20359130 ~ 20369760 (-) True XLOC_023405
TCONS_00046282 mRNA downstream 49355 20332979 ~ 20369604 (-) False XLOC_023405
TCONS_00046283 mRNA downstream 59609 20333107 ~ 20359350 (-) False XLOC_023405
TCONS_00046280 mRNA downstream 97947 20214418 ~ 20321012 (-) False XLOC_023404
TCONS_00046281 mRNA downstream 98479 20229240 ~ 20320480 (-) True XLOC_023404
TCONS_00046287 mRNA upstream 5183 20450027 ~ 20531813 (-) False XLOC_023407
TCONS_00046289 mRNA upstream 5960 20450804 ~ 20531474 (-) False XLOC_023407
TCONS_00046293 mRNA upstream 144614 20589458 ~ 20599781 (-) False XLOC_023408
TCONS_00046294 mRNA upstream 144834 20589678 ~ 20599880 (-) False XLOC_023408
TCONS_00046295 mRNA upstream 146816 20591660 ~ 20641000 (-) True XLOC_023408
TCONS_00046277 other downstream 231529 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046272 other downstream 364702 20032331 ~ 20054257 (-) False XLOC_023397
TCONS_00046273 other downstream 379809 20032340 ~ 20039150 (-) True XLOC_023397
TCONS_00046264 other downstream 1130191 19288654 ~ 19288768 (-) True XLOC_023393
TCONS_00046263 other downstream 1499402 18910017 ~ 18919557 (-) True XLOC_023392
TCONS_00046286 other upstream 5183 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other upstream 26110 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046297 other upstream 202631 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046316 other upstream 694478 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046357 other upstream 1518208 21963052 ~ 21963168 (-) True XLOC_023437

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_03942344_03955439.mRNA True 2939 mRNA 0.47 20 CI01000018 3942087 ~ 3955439 (-)