RNA id: TCONS_00046287


Basic Information

Item Value
RNA id TCONS_00046287
length 1914
RNA type mRNA
GC content 0.45
exon number 7
gene id XLOC_023407
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20450027 ~ 20531813 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acacacacacacacacacatacggggAGAGAAAAGAGCGGCTGCAGATCAGACTCTTTGTTATTACACACTGTCACTGATCTCCATAGACCTCACAGGACATGAAGGCTGAACTGTTGCTAGTTTCTGCGGTCTGACAGGAGGATCTGCTGTTTGTgcggtgtgtgtgcgtgtgtgcgtgcgtgtgtgtgtttatttggatGCGGTGCTGGAGGATCGTGTGCGGTGAATGCATGTATGGTGCGTCTGCCATCTGGACTCACACGCTAGCTCGCTAGCATCAGGCTAGCCgaaaattatcaaaacataaGTGACCGAGGAGGAATAAAATCCCGTTTCCATGGACAACACGTCCATCATTACCCAGGTAGCAAATCCAAAGGAGGAAGAGATCCTTTCTTCTTGCCAAGAAAAAGTCTCCCAGTCCAATAGCAGTTTAAAGAAACACAGGAACCGAAGTATCTTTAGTCCCTTCTTCTGCTGTTTCCGGGACTATAATGCAGAGCCACCAGCCACCAACAACAAGACCTGCTCGCTCCCTCCACCTGCCGAGGATAACAGCAGCTCTCCAAAGCCTCCAGCCAAATACATTTTGCCTGAGGTCAGCATTAATGATTACGGCAAGAACTGTGTGGTCATTGACCTGGACGAGACCCTTGTGCACAGCTCCTTCAAGCCCATCAGCAATGCAGACTTTATAGTCCCTGTGGAGATCGACGGAACAGTTCATCAGGTGTATGTGCTGAAAAGGCCTCATGTGGACGAGTTTCTGCAGAAAATGGGCGAAATGTTTGAATGTGTTCTTTTTACAGCCAGCCTGGCTAAGTACGCTGACCCTGTAGCAGACCTGCTGGACCAGTGGGGGGTGTTCAGGGCTCGGCTCTTCAGGGAATCCTGTGTGTTTCACCGGGGAAACTACGTCAAAGACCTCAGCCGACTGGGCCGAGAGCTCAACAAGGTCATCATCGTGGACAACTCACCTGCCTCCTACATCTTCCACCCAGAGAACGCTgTGCCAGTTCAGTCGTGGTTTGATGACATGACAGACACAGAGCTCCTGGATTTACTGCCACTGTTTGAAGGCCTAAGCCGAGAGACTGACGTTTACAGTGTGTTACAGAGCCTGAGGGACAGGTAGCACACGGGCTCAACACTGCCTCCAAAACACCACcctccatccatcatccatccatccgtccgtccgttcaGTTCTGGCCTTCAGAGGATGCCATTCATCCAACCAACTACTCCAGATCCTCAATGGACCAAGGGCCTACAATAATCCTTGGCAAGCAAATACACATCTGAGTTCACCTTTTGACGCACAatgaaaataagtaaaacaaagcgtcattttttttttttttttaagaaacacgAGTTTAATATTCTTGAATATAAAAAAGATCAACAAGACATGCTATTTTTCTGGACCGGCGTGTAAACACTTTCaactttttgtttttcagttcaGGCTATGCAGGCAGTCTTCATCAGTAGTTCCAACAactgtgatttgtttttgtttttttatttcgttttgttCTCTTGTACCAAACAAAGTGCCTTCTGACTGTTGTTTTTATGAGGACATGTTTTTTGTATGCTGCATATTTACAGTTCGAAACCTTTAAACCAACCCTTACTGTAAGACCAAGGTAAACGGTGAGTcttttgatggaaaaaaaaacgCAGACTTTTCACTGGACTGGAGAGAAGCAGATGCGCTTGTTTTCTTGGGTTCTTTTAATGCCTTTGAAAATATAGCAagtattgtgttcaaaagaagcGTTTGCATCTATTAGCCAACTGTGATCTGAACTAATAACGCtacatatattgtaaaaaaaaaacaatccaataCGTCAGGATCTGAAATTATTAATCATCGTGGAAATAAAAGATGCAATCAGTA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0006338 chromatin remodeling biological_process
GO:0000819 sister chromatid segregation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0007049 cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:0007064 mitotic sister chromatid cohesion biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0016043 cellular component organization biological_process
GO:0071565 nBAF complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0016514 SWI/SNF complex cellular_component
GO:0070603 SWI/SNF superfamily-type complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:1904949 ATPase complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-060825-333 Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Orthologous to human CTDSPL (CTD small phosphatase like).

Ensembl:

ensembl_id ENSDART00000089428

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047174 lncRNA downstream 265002 20181997 ~ 20185025 (-) True XLOC_023400
TCONS_00046274 lncRNA downstream 386977 20060691 ~ 20063050 (-) True XLOC_023398
TCONS_00046275 lncRNA downstream 387971 20060691 ~ 20062056 (-) False XLOC_023398
TCONS_00046271 lncRNA downstream 437995 20010582 ~ 20012032 (-) True XLOC_023396
TCONS_00046854 lncRNA downstream 487145 19960872 ~ 19962882 (-) True XLOC_023395
TCONS_00046315 lncRNA upstream 605362 21137175 ~ 21139396 (-) False XLOC_023418
TCONS_00046319 lncRNA upstream 694720 21226533 ~ 21228953 (-) False XLOC_023420
TCONS_00047176 lncRNA upstream 694720 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00046320 lncRNA upstream 697056 21228869 ~ 21231171 (-) True XLOC_023420
TCONS_00046855 lncRNA upstream 799203 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046285 mRNA downstream 5183 20418959 ~ 20444844 (-) True XLOC_023406
TCONS_00046284 mRNA downstream 80267 20359130 ~ 20369760 (-) True XLOC_023405
TCONS_00046282 mRNA downstream 80423 20332979 ~ 20369604 (-) False XLOC_023405
TCONS_00046283 mRNA downstream 90677 20333107 ~ 20359350 (-) False XLOC_023405
TCONS_00046280 mRNA downstream 129015 20214418 ~ 20321012 (-) False XLOC_023404
TCONS_00046293 mRNA upstream 57645 20589458 ~ 20599781 (-) False XLOC_023408
TCONS_00046294 mRNA upstream 57865 20589678 ~ 20599880 (-) False XLOC_023408
TCONS_00046295 mRNA upstream 59847 20591660 ~ 20641000 (-) True XLOC_023408
TCONS_00046296 mRNA upstream 111845 20643658 ~ 20658446 (-) False XLOC_023409
TCONS_00046298 mRNA upstream 119187 20651000 ~ 20652473 (-) False XLOC_023409
TCONS_00046277 other downstream 262597 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046272 other downstream 395770 20032331 ~ 20054257 (-) False XLOC_023397
TCONS_00046273 other downstream 410877 20032340 ~ 20039150 (-) True XLOC_023397
TCONS_00046264 other downstream 1161259 19288654 ~ 19288768 (-) True XLOC_023393
TCONS_00046263 other downstream 1530470 18910017 ~ 18919557 (-) True XLOC_023392
TCONS_00046297 other upstream 115662 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046316 other upstream 607509 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046357 other upstream 1431239 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 1432237 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 1539408 22071221 ~ 22097763 (-) True XLOC_023443

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_03965992_03984331.mRNA True 2213 mRNA 0.39 7 CI01000018 3965939 ~ 3985519 (-)