RNA id: TCONS_00046296


Basic Information

Item Value
RNA id TCONS_00046296
length 4810
RNA type mRNA
GC content 0.43
exon number 17
gene id XLOC_023409
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20643658 ~ 20658668 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATCTGGCAACATGAAAAAACCTCAATTGATCAGTCGACAGAGCGGGTTTAGCTTTTTTGGAGCTTTTTGACTTTTAACTAGCTGTTAAGGAAGCCCACTCTGTGGAAAAAATGGGGGTGAAAGATCGCCCTCAGTGCTATTTTGACGTGGAAATCAACAGAGAACCAGTTGGACGAATTGTCTTTCAACTGTTCTCCGATATTTGTCCCAAGACAAGTAAAAATTTCCTTTGCCTGTGCACTGGCGAGAAAGGCAGTGGCAAAGCTACAGGGAAAAAATTATGCTATAAAGGTTCAACTTTCCATCGAGTTGTAAAGAACTTCATGATCCAGGGGGGTGATTTTACTGAGGgcAATGGAAGAGGGGGAGAATCTATATTTGGTGGTTTCTTTGAAGATGAGAACTTTACTCTCAAACATGACAGAGCCTTCCTCTTGTCGATGGCCAACCGTGGCAAAGACACAAATGGCTCCCAGTTCTTCATAACTACAAAGACAGCGCCTCACCTAGATGGAGTGCATGTGGTCTTCGGGCTGGTCATCTCTGGCTTTGAGGTCATAAAGAACATTGAGGGGCTGAAGACTGACTCAGCCAGCAGACCGTATGCTGATGTCAGAGTGATTGACTGTGGACAGCTGATTACAAAGTCTGCAAACGACGTTCTTCAAGGCAAACTGAGAAAAGCATTCTATTCTGAGGATGACTCTCAGAGTTCCTCTGAGTCTTTATCTGAGCATTCCTCACTAGAAGAAGAGCCTACATCTCGAAAGAGGAAAAAAAGCTCAAAGAGTAAACATGCAAAGAGAAGCAGAAGAGAGGCAAAGAAGGACAGAGAGACTGTTAAAACTGCAGGACCCGCAAGTCATGCTGAGGGCGAGATGGCAGAGGAAAATGATGGTGAagctgaacagaatgtgaaaagGGAGAAGCCTGTGGTCCGACCAGAAGAGATCCCACCTGTGCCAGAAAACCGTTTCCTGCTCCGCAGAGACATGCCTACCCAGGAGGAGGCAATAAAAATTGATGTACAGGACACAGACATTGTACCAAATGACACCAAACCAGCTGTCACAAAATCTGGACGCAAGATCAAAGGCCGCGGAACTATGAGATACCATACACCCCCTCGGTCAAAGTCCCGTTCAGAGTCAGAATGTGAACGGGGGAGCAGTGAGACTCCCCCACACTGGAAAGAGGAAATGCAGAGGACCAAGGCTTACCAGCCCCCCAGTGTGGAGAGATGGAGTAAAGAAGAAAGATGGGATGACAGAAGTGACACCCCAAGGTCCAGGTCAGAATCCAGAGAACATTCCTTGGGTGAGGCCTCTGTGTACTCAAGCCAACATagatctaaaaaagaaaaaaagaaagccaAACAAAAGAAGAAATCTAAGAAACGGAAGCAtgctaaaaaacataaaaagaccAAGACCAAGGAAACATCTCTGACGGATGGTGAGGTGTCTGTGTCCTCAGGTAAGAGGACAAAACACTCAAGCCGTGCTGAAAGGAGACGTTCTCGTTCTTATTCTCGCTCATCCTCACGTCACTCACATAGATCGTATAAATCGGAGTCAGAAAGGAGACATTACTTATCGAGCTCTTCTAGAGATTCACGGTCTTATTCGAGATCTAGGAGCAGATCATATTCTAGAAGTGACTCAAGGTCAGAGAGGCGGGCTCGATCATCCAAGAGGTCAAGTCGAAGCCGATCAGGGAGGTCTGTTACACATTCTAGGTCACGGTCTCGTTCTAGATACAGGACAAGGTCAAGAACCAGATCAAACTCTAGGTATAGTTCAGAAACCCCAACACGTTCCAAGAAAAGAAATGAATTGAGATCCCCTCGAAAGTCCAAGCCTACAGAGGGTGGTATTTCCAGATTAGATAAGTCTGTCCCTAAATCGATTAAAGGTGAAGAAGCTAAAGTTCAACCTTCAGCGTCTTCAGAGAGTGTCTCTGCATTGCCTATGAGTGACAGTCCACCACCTTCTCGATGGAAACCAGGCCTGAAACCCTGGAAACCTTCTTATGTCCGTATCCCAGACACTGATGTAAAATCAGCTCTGGCTTCCAATGCACTAACAAGCTCATCGTCAAATGCACCTCTGGAGACAATGTCCTCTTTAAAGCAAGATATAGCTGTTAGTCAAAGGGATCCAAGCAGTGGTAACAGTAACATTCCTGATAGGCTCTTGGAAAGAAGTTTATCCAGGAGCAGGTCTTGTAGTCAATCAGGAAGCTGCAGCAAATCACCAACTCATTATGGCAATAGATCGTCCTCCTGCAGTAGGTCAGAATCTTATAGTTCATACAAAGAAAGATCCACTGTGAAGAAGAGAAAACATTTCAGTTCTCATAGAAATGCTCAAAAGAGAGACAACCATGCAAATCGTCATGATGGTGGCCACAAAGATACATCTCCCTCCTCAGAGGATGTATCAGATAATCCATACAGCCCATTACACGTGCAAAGTGACATCTTGGTACAGAAAAACACGCTTGATTCTCTTTCAGCCCTACGGGCATTGGCATTAAAAAGCAAGAACCTCAATCGAAGGAAAGAACCATTAATGGACAAGAAAAGTGCATCTGGTTGGGAAAGTGATGAGGAGAATGCAAGTAAGACTAATACTGCCAAAGTACACAATCAGCACCTTGTTAAAGATGAAGAActtaatgaaatgaaaaaaaggcAGATTTTGTCTCGTTGTTGGGAGTCTGAGAGtgacacagaaataccagataaAACTGCTGTTGGTGAGGCTAAATATTTGTCTGAGAAAGAGGAGGGAGAGGCTAGTACAGAATCAGAATATGAATACCCTTTATGGCCAAACCTAGGTGCTGAAATGTCTAAGGAGTTAAAAGCTAATGACGAGCACTCTGCAGACACAAAACCTTCAAAGCACAAGAACAAAAAAGCCAAACGGAAGCACAAACACAAGAGGAAGAATTCTTCAAGGTCAGCATCTCGTAAATCCAAGGCCAAGAAATCCAAGAAACATCAGAAGCCAAAAGAGACATTTCATTGGCAGCCTCCTCTAGAGTTTGGGGACGAAGGTGAGGAGGACGATTCAGTCACTCAAACCAAGCAATTACACAAAGCAAGTACTGATGCCATCAATGATGGAACAAAACGTAATTTAAAGGCTGAACAGATCAAGCAAAAAGTCTCAGAGAATACAGATCAGGATCAAAAGATTGTTGAATCACAGCAAGATAAGTTGTCAATAGAGTCTTCTAAAGTTATTGATGAGAATGAGAAGATGCCtaaaatccaaaaatcaaagttACACAACAATACCAAAAGAGATCTTGCTCAAAGCCACCCAGAAACCCTTTCCAATCTTTCAGACACTAACTTGGCAAGTAACAAACCATCAGACCTGAATAAAGTTGAGCCACATTCTCCAGAGTGCATACCAGAAGCTCAGCAACTTGGGCCCAAAGCAACTGGCTTTTCCCCACTGAAAAATATTCTAAATAACGACAACGTGCTTGTTCCATCTCAGAAAGATAAAGTCAGCTCCATTACTACTGGATCAGCTTTACCACAAGACAGTAAACAAGAGGAAACTATACCTGGTGACAGTTGTGTCTCAGTGGTTGAAAATAAATGGAAACCTTTGACAGGGATGACGGCTGTGCAAACCATTACGAGAAAGCCTTTcattatgaaaataaacaaacagcaagATCAACTTGTAGGAAAGAGCCAGGGTGTCAAGATTGAGATCAAGAGCAAGAGTAAAGTTCGTCCAGGATCCCTTTTTGATGAGGTACGAAAGACTGCTCGGTTAAATCAAAGACCCAGAAATCAAGACAGCTCAAGTGAAGAAGACTCCCTTCCAGCTGCAGGAGAAAAGCCTGAAGCCCATAATCACTCAAGGAGCAAGTCAAAGTCTGTGTCTAGTCATAGGTCCCACCGCAGAAGTAGGTCCCATTCATATAGCCACCCCAGGAGCAGGTCCAGAAGCTACACCTACTCTTCCAGgagCTACAGTAGAAGTAGAAGCAGAAGTAGATACAGTAAAGGACACTCTCGTTCTCGAAGTAGCACCTACCGAAGTTACCGTAGCCGCACACACAGTAGGAGTTGCTCTAGGGGTCGGTATAGAGGTCGTTACAGATCAAGGTCAGACTCTTACGATAGTTATTCTAGCCACAGCCGCAGTCGTAGCAGAAGAAGAGGGCATCGGAGAAGCAAAAGCTCTGATCGCAGGTCCAGGTCATATCGCTCCTACAGTCGCAGTTCCTCTAGGCGGCGAAGTCATAGTCGAAGCAGTCGATACAGCTGAGTTTAAGGCATAATGATTGGATCAATAGTTTAATTTTTGTATGGTAATTTACATACTTTCTTGTACACTGACattatgctgtattttttttttttacattttatgaatgaatgtacatttgaaaaaaacTTAGTCACCACTTTTTATTCTGACACTTTTTCTGTATTCCTAGCAAAGGGAGCATAGAAACCATCCAACTGTATAGCCAAGGTTATATATAAACAGCTACTTACCTCTTACTTATCTTTGAAACATGAGAGtttgtaaaatgtatttcatGTTTGGAAGGATTGTAACACGCAGCTCTGTTGGTTAACATCAATGGAAAAAGTTTTGATTGGACTAAatgaatgttttatgtttaatagattgacttgtttttttattatttttatttgtacataAAATACTCTGAATGTATCTAATGCTGCTTATTGATATACTGTTGAATTATAACAGACACACCTTGccaactgtaaataaaacaatatttgtttgtGAAATGCT

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016853 isomerase activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function
GO:0016018 cyclosporin A binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-030131-1725 Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm and nucleus. Orthologous to human NKTR (natural killer cell triggering receptor).

Ensembl:

ensembl_id ENSDART00000127923

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047175 lncRNA downstream 142357 20450027 ~ 20501301 (-) False XLOC_023407
TCONS_00046291 lncRNA downstream 142357 20470778 ~ 20501301 (-) False XLOC_023407
TCONS_00046288 lncRNA downstream 172667 20450615 ~ 20470991 (-) False XLOC_023407
TCONS_00046290 lncRNA downstream 174368 20450838 ~ 20469290 (-) False XLOC_023407
TCONS_00047174 lncRNA downstream 458633 20181997 ~ 20185025 (-) True XLOC_023400
TCONS_00046315 lncRNA upstream 478729 21137175 ~ 21139396 (-) False XLOC_023418
TCONS_00046319 lncRNA upstream 568087 21226533 ~ 21228953 (-) False XLOC_023420
TCONS_00047176 lncRNA upstream 568087 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00046320 lncRNA upstream 570423 21228869 ~ 21231171 (-) True XLOC_023420
TCONS_00046855 lncRNA upstream 672570 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046295 mRNA downstream 2658 20591660 ~ 20641000 (-) True XLOC_023408
TCONS_00046294 mRNA downstream 43778 20589678 ~ 20599880 (-) False XLOC_023408
TCONS_00046293 mRNA downstream 43877 20589458 ~ 20599781 (-) False XLOC_023408
TCONS_00046287 mRNA downstream 111845 20450027 ~ 20531813 (-) False XLOC_023407
TCONS_00046289 mRNA downstream 112184 20450804 ~ 20531474 (-) False XLOC_023407
TCONS_00046301 mRNA upstream 49728 20708174 ~ 20808283 (-) True XLOC_023410
TCONS_00046302 mRNA upstream 234336 20892782 ~ 20908249 (-) False XLOC_023411
TCONS_00046304 mRNA upstream 234937 20893383 ~ 20908395 (-) False XLOC_023411
TCONS_00046303 mRNA upstream 234937 20893383 ~ 20908395 (-) True XLOC_023411
TCONS_00046305 mRNA upstream 251476 20909922 ~ 20915050 (-) True XLOC_023412
TCONS_00046286 other downstream 112072 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 172568 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 456228 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046272 other downstream 589401 20032331 ~ 20054257 (-) False XLOC_023397
TCONS_00046273 other downstream 604508 20032340 ~ 20039150 (-) True XLOC_023397
TCONS_00046316 other upstream 480876 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046357 other upstream 1304606 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 1305604 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 1412775 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 1650498 22308944 ~ 22309058 (-) True XLOC_023445

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_04075425_04081550.mRNA True 968 mRNA 0.45 9 CI01000018 4075405 ~ 4081550 (-)