RNA id: TCONS_00046317


Basic Information

Item Value
RNA id TCONS_00046317
length 2555
RNA type mRNA
GC content 0.47
exon number 15
gene id XLOC_023419
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21154120 ~ 21172122 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGACCTTTGACCCTGCATAGGGAGACAGGCTGTGACGTCATCTCACAACTGGACTGGACCGACTGAATGAAGTCAGCTGACTTTTCATTGCTGCTCACGTTTCATCTCACTAAAGGACCCAGACTGTCTCATCATCTGAGACACATTAAAAATGGACTTCTCCAAGTTGGCCAAAATCCGAGATGAGGAGCGGGAGGGACAATTTGGATATGTGCATGGTGTATCTGGACCTGTGGTGACAGCCTCCAGTATGGCAGGAGCTGCTATGTACGAGCTGGTGCGAGTGGGTCACAGTGAGCTTGTGGGAGAGATCATTAGACTGGAGGGTGATATGGCCACCATTCAGGTCTATGAGGAGACATCTGGTGTGTCAGTCGGAGACCCTGTCCTGCGCACAGGGAAGCCCCTCTCTGTGGAGTTAGGGCCAGGAATCATGGGCTCCATCTTTGATGGTATTCAGCGTCCCCTTAAAGACATCAACGACCTAACTCAAAGCATCTACATTCCCAGGGGAGTCAACATTGGTGCTCTTAACCGTGATCTCAAATGGGAGTTCACTCCATCAAAGAATTTGCGTGTTGGCAGTCACATCACTGGAGGTGATATTTATGGGAACGTGTTCGAAAACTCTCTCATTAAACATAAAATCATGTTACCCCCGAAAAGCAGAGGAACCGTCACATACGTCGCACCACCTGGAAACTATGATGTCTCGGATGTGGTGTTGGAGCTGGAGTTTGAGGGGGTGAAAGAGAAGTTCACTATGATGCAGGTGTGGCCGGTGCGTCAGGTGCGTCCCGTCACAGAGAAACTTCCTGCAAATCACCCTCTGCTGACTGGACAGAGAGTCCTGGATGCCCTCTTTCCATGTGTGCAAGGAGGAACCACAGCAATCCCCGGTGCTTTCGGATGTGGTAAAACCGTGATTTCTCAGTCTCTGTCTAAGTACTCTAACAGTGATGTCATCATCTATGTGGGCTGTGGAGAACGAGGAAATGAAATGTCTGAAGTACTTCGAGATTTTCCTGAGCTGACCATGGAAGTGGGAGGTAAGGTGGAGAGCATCATGAAGAGAACAGCTTTGGTTGCAAACACATCCAACATGCCTGTGGCTGCCAGAGAAGCTTCTATTTACACAGGAATCACgctgtctgagtatttcagagacATGGGCTACAATGTGAGCATGATGGCTGACTCTACGTCTCGATGGGCAGAGGCTTTGAGAGAGATCTCTGGTCGTCTGGCTGAGATGCCTGCTGACAGCGGTTATCCTGCATATCTCGGAGCACGTCTGGCTTCGTTTTATGAGCGTGCCGGAAGAGTTAAATGTCTAGGGAACCCAGAGAGAGAGGGCAGTGTCAGCATTGTGGGAGCTGTGTCTCCCCCTGGTGGTGATTTCTCAGATCCTGTGACCTCTGCTACACTTGGTATTGTACAAGTGTTTTGGGGTCTGGACAAAAAGCTGGCTCAGAGGAAGCACTTCCCCTCAGTGAACTGGCTAATCAGTTACAGTAAGTACACACGAGCGCTGGACGAGTACTATGATAAACACTTCCCTGAGTTTGTGCCGCTGCGCACTAAAGCCAAAGAGATCCTGCAGGAAGAAGAGGACCTGGCTGAGATTGTGCAGCTCGTGGGGAAGGCTTCATTGGCTGAAACGGATAAGATCACCCTGGAAGTTGCCAAGCTGATCAAGGATGATTTCTTGCAACAAAATGGATACACACCGTATGACAGgtTCTGTCCTTTCTATAAGACGGTTGGTGTCTTGTCCAACATGATTGCATTTTATGATATGGCTCGTCATGCCGTAGAGACCACGGCACAGAGCGACAATAAGATCACCTGGGCCATGATCAGAGAGCACATGGGAGAAATCCTCTACAGGATCAGCTCCATGAAGTTTAAGGACCCTGTGAAAGAGGGTGAGGAGAAGATTAAAGCTGATTACGCTCAGCTCCTTGAAGACATGCAAAACGCTTTCCGTACACTGGAAGACTGAGAGCCTCGTCTTAACCATCATTCTCAGGGCAGGGCAGCAGAAACCACCCTCCTCACAGACAGCCCTGTCCTTTACCTCCATATACTACATTCCACTGCTTTGTATTCATCTTGTGCTGTTTTAGATGCTCTAGTGTTCTTGATGTGTCTCCAAATACCATTTCTTTTGTACGTGTATATGCATTTGTGAATATGTGCAATCTCTATTATCCTCCTCAAAGCCTCTGCTCTGCCCTTTATACTTTACTGATCATCATGTCCGTAAATATAGATGTTATTAAATAATTTGATGTAATTATTGCTCTATTTTTATCTGTACAGAAGATTGAAAGACTTCAGAAGTTGACTATATTTACTGCCAGCATATTTACAGTTCTAATGGTTGCCAATATAATTATGTATACAAATATGTGTTGTTTTTTGGTACGGCTGTTTATTGCAGTATTGTCCTGTACATTTCGTTGAGGATGCAGCATATTTGCTCTTCATTGCTCACTTGAAAACGTGTCAAGAGTCGtggaaaaacagaaataaatattgtttaattta

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0005774 vacuolar membrane cellular_component
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9529 Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in proton transmembrane transport. Predicted to act upstream of or within ATP metabolic process and ion transport. Predicted to be located in apical plasma membrane. Predicted to be part of proton-transporting V-type ATPase, V1 domain. Is expressed in several structures, including integument ionocyte; lateral line ganglion; neural crest; yolk; and yolk syncytial layer. Human ortholog(s) of this gene implicated in autosomal recessive cutis laxa type IID and developmental and epileptic encephalopathy 93. Orthologous to human ATP6V1A (ATPase H+ transporting V1 subunit A).

Ensembl:

ensembl_id ENSDART00000154259

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046315 lncRNA downstream 14724 21137175 ~ 21139396 (-) False XLOC_023418
TCONS_00047175 lncRNA downstream 652819 20450027 ~ 20501301 (-) False XLOC_023407
TCONS_00046291 lncRNA downstream 652819 20470778 ~ 20501301 (-) False XLOC_023407
TCONS_00046288 lncRNA downstream 683129 20450615 ~ 20470991 (-) False XLOC_023407
TCONS_00046290 lncRNA downstream 684830 20450838 ~ 20469290 (-) False XLOC_023407
TCONS_00046319 lncRNA upstream 54411 21226533 ~ 21228953 (-) False XLOC_023420
TCONS_00047176 lncRNA upstream 54411 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00046320 lncRNA upstream 56747 21228869 ~ 21231171 (-) True XLOC_023420
TCONS_00046855 lncRNA upstream 158894 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046322 lncRNA upstream 196089 21368211 ~ 21369580 (-) True XLOC_023421
TCONS_00046313 mRNA downstream 3951 21131874 ~ 21150169 (-) False XLOC_023418
TCONS_00046314 mRNA downstream 4020 21132981 ~ 21150100 (-) False XLOC_023418
TCONS_00046312 mRNA downstream 22513 21122836 ~ 21131607 (-) True XLOC_023417
TCONS_00046309 mRNA downstream 63536 21058779 ~ 21090584 (-) False XLOC_023416
TCONS_00046310 mRNA downstream 63603 21059686 ~ 21090517 (-) False XLOC_023416
TCONS_00046318 mRNA upstream 34121 21206243 ~ 21258945 (-) False XLOC_023420
TCONS_00046321 mRNA upstream 158631 21330753 ~ 21343982 (-) False XLOC_023421
TCONS_00046323 mRNA upstream 199157 21371279 ~ 21471389 (-) False XLOC_023422
TCONS_00046324 mRNA upstream 200271 21372393 ~ 21470766 (-) False XLOC_023422
TCONS_00046325 mRNA upstream 200271 21372393 ~ 21487609 (-) False XLOC_023422
TCONS_00046316 other downstream 9820 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 495452 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046286 other downstream 622534 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 683030 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 966690 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046357 other upstream 790930 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 791928 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 899099 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 1136822 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 1199864 22371986 ~ 22372100 (-) True XLOC_023446

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_04361150_04364887.mRNA True 2138 mRNA 0.46 12 CI01000018 4360619 ~ 4364887 (-)