Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00047176 |
| length | 906 |
| lncRNA type | sense_over |
| GC content | 0.46 |
| exon number | 3 |
| gene id | XLOC_023420 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007135.7 |
| NCBI id | CM002908.2 |
| chromosome length | 42172926 |
| location | 21206243 ~ 21258945 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007224 | smoothened signaling pathway | biological_process |
| GO:0031290 | retinal ganglion cell axon guidance | biological_process |
| GO:0008589 | regulation of smoothened signaling pathway | biological_process |
| GO:0007411 | axon guidance | biological_process |
| GO:0045663 | positive regulation of myoblast differentiation | biological_process |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0042802 | identical protein binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00046315 | lncRNA | downstream | 87137 | 21137175 ~ 21139396 (-) | False | XLOC_023418 |
| TCONS_00047175 | lncRNA | downstream | 725232 | 20450027 ~ 20501301 (-) | False | XLOC_023407 |
| TCONS_00046855 | lncRNA | upstream | 99845 | 21331016 ~ 21369754 (-) | False | XLOC_023421 |
| TCONS_00046322 | lncRNA | upstream | 137040 | 21368211 ~ 21369580 (-) | True | XLOC_023421 |
| TCONS_00046337 | lncRNA | upstream | 380431 | 21611602 ~ 21620256 (-) | True | XLOC_023424 |
| TCONS_00047177 | lncRNA | upstream | 822638 | 22053809 ~ 22066831 (-) | True | XLOC_023442 |
| TCONS_00046366 | lncRNA | upstream | 840050 | 22071221 ~ 22074272 (-) | False | XLOC_023443 |
| TCONS_00046317 | mRNA | downstream | 54411 | 21154120 ~ 21172122 (-) | True | XLOC_023419 |
| TCONS_00046313 | mRNA | downstream | 76364 | 21131874 ~ 21150169 (-) | False | XLOC_023418 |
| TCONS_00046314 | mRNA | downstream | 76433 | 21132981 ~ 21150100 (-) | False | XLOC_023418 |
| TCONS_00046312 | mRNA | downstream | 94926 | 21122836 ~ 21131607 (-) | True | XLOC_023417 |
| TCONS_00046311 | mRNA | downstream | 136086 | 21078004 ~ 21090447 (-) | True | XLOC_023416 |
| TCONS_00046321 | mRNA | upstream | 99582 | 21330753 ~ 21343982 (-) | False | XLOC_023421 |
| TCONS_00046323 | mRNA | upstream | 140108 | 21371279 ~ 21471389 (-) | False | XLOC_023422 |
| TCONS_00046324 | mRNA | upstream | 141222 | 21372393 ~ 21470766 (-) | False | XLOC_023422 |
| TCONS_00046325 | mRNA | upstream | 141222 | 21372393 ~ 21487609 (-) | False | XLOC_023422 |
| TCONS_00046326 | mRNA | upstream | 141222 | 21372393 ~ 21490628 (-) | False | XLOC_023422 |
| TCONS_00046316 | other | downstream | 82233 | 21139322 ~ 21144300 (-) | True | XLOC_023418 |
| TCONS_00046297 | other | downstream | 567865 | 20647475 ~ 20658668 (-) | False | XLOC_023409 |
| TCONS_00046286 | other | downstream | 694947 | 20450027 ~ 20531586 (-) | False | XLOC_023407 |
| TCONS_00046292 | other | downstream | 755443 | 20470954 ~ 20471090 (-) | True | XLOC_023407 |
| TCONS_00046277 | other | downstream | 1039103 | 20187316 ~ 20187430 (-) | True | XLOC_023401 |
| TCONS_00046357 | other | upstream | 731881 | 21963052 ~ 21963168 (-) | True | XLOC_023437 |
| TCONS_00046358 | other | upstream | 732879 | 21964050 ~ 21968116 (-) | False | XLOC_023436 |
| TCONS_00046365 | other | upstream | 840050 | 22071221 ~ 22097763 (-) | True | XLOC_023443 |
| TCONS_00046371 | other | upstream | 1077773 | 22308944 ~ 22309058 (-) | True | XLOC_023445 |
| TCONS_00046372 | other | upstream | 1140815 | 22371986 ~ 22372100 (-) | True | XLOC_023446 |
