RNA id: TCONS_00046321


Basic Information

Item Value
RNA id TCONS_00046321
length 2498
RNA type mRNA
GC content 0.47
exon number 18
gene id XLOC_023421
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21330753 ~ 21369754 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCTCCTGTTACTAAcagcacaaacaaaaacaaacggtGATACCCCTGTCTGTTACTGAGATGTCTTTAGTGCGCATAAACCGTCCTTTCTATTGTGCTGGTAAAAGACCCATACGAACCAGAAAAGTGTCTGCACCAAAGAAAGAATGGGTGagCACAGTCAATGATCTTTCAGTGCACAAAGCCACACCAGAGGAGCTGGCTCGACGTCATGAGATGCACAGGTCTCAGAACAGAGTTGTTGCACAGTGGGAATTAAAAGAAAAGACTCTAACACGTAGACGGAGGAAGAACCAGCCCCTGAGTCCTCCAGGACTTGATAGAGCCAGGCGAGACATCATCAGAGAGGTGTTTTCAGATCACTGTCAGCTGCAGGATGTCATTGCGCGATCAGACAGAGCTTTGGCTGTAGTGAAAGACCTTTTTGGCGATGCACCTCGTAGACGCACAGGATTCCCCAGCATTACCGTGGCACCTGACTGTGACTCTGACTCTGAGCTTCCTGTTCATCAAAAACTTGATCCTCCAACACAGCTGTCATTGCTCAGCCAGTCTATGATGGATCAGCAGGCCCTCAATGAGTTGGAGGAGCATGAAGAAGAATGTGATGAAGTCCAGGATGCTTCTGTGCACCTCAAATCTGTGATGCACAGGAAAAGAAATAAATGTAGGCCAAAGTCTTTTCCAAGAGGCTCAGATAATCATGAGCAAGATCTACCCCAGAAACCATGCACTACAGGAGTCAGAGAAGACTACGCAGccCTCAATGCTACAGTGGCTGTAGAACAGCTCAAATCTAGACAGACTCATCCGGGTGTTAACCAGTCTACCTCATTTGTTGATCAGTTTCTAAACCCAGAGCCTGCTTCCTCTCAACACGGTGTTAAGAACAGGTCAGTTCaagccagcagagggcgctcagcACATACATCTGCTATGAACAGCTCAGGGTTACACTCTCTGGCAGGAAACCAGTCTAGTCTGGAGCTTCTGCAGAGCATGCTTGAGCAGGTGGAGACTGAGCTGGACTCTCTAGACAAGCAGAATCCTCAAAGCTCAGAAACCAGACCTCAGCAGCAAAGACCAGGCCTCACTGGCTTTTCTGTGGCTCTACTGACAACACTCAGGCGTCTGACCAGCCATATCAAAAAAAGAGACGAGGAGTCTTTGAGGGAGACACGGGAGAGAAGAAGGCTTGAAGACGAGGTAAAGGAGCAGCGAGCTCTGATTGATGCGCTGACTGTGGAGACGCTGACGCTAAGAGAGGAGAGCGCCGCCCTGCAGGCGAGGTTGCAGCTGCAGATCTCTGATCTAGAACAGCGACTAAATGCTGTTAACCTGATAGCGGGAAGACCAGATTCTGCAGAACCTCACAGAACAGTGCAAATCATAGACAACACAACTCAAAGAAGCAGTCATCTGGAATCTGAAAAGGATCTACAGCGACAGGACTTTGTCTCCGCAGCTGTGCTGCTCTCTCCTCCTCGCCAACAAGATGGTCATCCTCATGCAGCGTTTCGTCCACATCCGCATGCAGCCTCACAGCTCAACAGCGGCTCCTGTGCTGCAACAGGAAGTCAGGGTTCACTGGAGGACTTTGACATCTCCATCTCTCCTTCCTCCTTCGCTAGTCTACCACGACCCGCTCATTTGCTGGACGATCTCTCCCAGGATGCCATGCTGGAGGAGATTGCCGAACTGACTCGACAGAATGCTGCCATAAGGGCTCAGTTGGTGCAGCAGCGTCCATCTCCAGCTGGAGCTTCAGTGTCCAGAGAGCTGAGTGCAGAAACGTTCTCCACAACCAGCTCTGTGTGCAGACAAACACCACACTGTACAGAGCTACAGCAAACACTGCAGCCTGTTTCTGCAGAAAGACCTTCAGCAATGGAGATTGAACAGAAATTACAGGAACTGAACCGCCAAAGTGCTGAAGCAAGAGCTAAACTGCTAGAGCTGATTGAGCAACAGAAACAGAGCACATCCATCAGAGCTTCTCCTGCCATCTCTCCTGTTCCTCCTCCCTCCAGCAGCACTCTCACagTTAAAGGATTCAATCCAGAGCCATTTTTGACACTTCCTGAGAGAAGCCATTCACCACAACTCAGTGCGAGCATGCAAAGGTCAGCTGGAAGAGTCTCACCACACAACTCTGAAAATGGGGAAATCCCAGAGAATCAGGTGGAAAAGCTGAAAAGAGATGGCTGGTTTGCATTGTCAGCTCATGTCAAATAATGTTTctatgcacaacatgtccaataCATCCTTAACTTGGTCTTCAATATAAAAAGACATCATGACCAGTGTAACAAACCATGAGCGTTAAAGGAGTAGATACATTTGATCTAGAATATCGTACACTTGAATTCTCATATgaagtattttttatatatatatatatattagacatgCTTAATGACTTGTCAGGTTTATTTAATGtatgaattttaatattttttttaagcaataaaaaatgccacaataaatttCAGATCATT

Function

GO:

id name namespace
GO:0090307 mitotic spindle assembly biological_process
GO:0046599 regulation of centriole replication biological_process
GO:0051310 metaphase plate congression biological_process
GO:0005813 centrosome cellular_component
GO:0005814 centriole cellular_component
GO:0005819 spindle cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-041212-64 Predicted to be involved in metaphase plate congression; mitotic spindle assembly; and regulation of centriole replication. Predicted to act upstream of or within cell division. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be active in centriole; centrosome; and spindle. Orthologous to human SPICE1 (spindle and centriole associated protein 1).

Ensembl:

ensembl_id ENSDART00000012653

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047176 lncRNA downstream 99582 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00046320 lncRNA downstream 99582 21228869 ~ 21231171 (-) True XLOC_023420
TCONS_00046319 lncRNA downstream 101800 21226533 ~ 21228953 (-) False XLOC_023420
TCONS_00046315 lncRNA downstream 191357 21137175 ~ 21139396 (-) False XLOC_023418
TCONS_00047175 lncRNA downstream 829452 20450027 ~ 20501301 (-) False XLOC_023407
TCONS_00046322 lncRNA upstream 24229 21368211 ~ 21369580 (-) True XLOC_023421
TCONS_00046337 lncRNA upstream 267620 21611602 ~ 21620256 (-) True XLOC_023424
TCONS_00047177 lncRNA upstream 709827 22053809 ~ 22066831 (-) True XLOC_023442
TCONS_00046366 lncRNA upstream 727239 22071221 ~ 22074272 (-) False XLOC_023443
TCONS_00046367 lncRNA upstream 727239 22071221 ~ 22077479 (-) False XLOC_023443
TCONS_00046318 mRNA downstream 71808 21206243 ~ 21258945 (-) False XLOC_023420
TCONS_00046317 mRNA downstream 158631 21154120 ~ 21172122 (-) True XLOC_023419
TCONS_00046313 mRNA downstream 180584 21131874 ~ 21150169 (-) False XLOC_023418
TCONS_00046314 mRNA downstream 180653 21132981 ~ 21150100 (-) False XLOC_023418
TCONS_00046312 mRNA downstream 199146 21122836 ~ 21131607 (-) True XLOC_023417
TCONS_00046323 mRNA upstream 27297 21371279 ~ 21471389 (-) False XLOC_023422
TCONS_00046324 mRNA upstream 28411 21372393 ~ 21470766 (-) False XLOC_023422
TCONS_00046325 mRNA upstream 28411 21372393 ~ 21487609 (-) False XLOC_023422
TCONS_00046326 mRNA upstream 28411 21372393 ~ 21490628 (-) False XLOC_023422
TCONS_00046328 mRNA upstream 28411 21372393 ~ 21498802 (-) False XLOC_023422
TCONS_00046316 other downstream 186453 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 672085 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046286 other downstream 799167 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 859663 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 1143323 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046357 other upstream 619070 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 620068 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 727239 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 964962 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 1028004 22371986 ~ 22372100 (-) True XLOC_023446

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_04464837_04473051.mRNA True 2056 mRNA 0.51 14 CI01000018 4464638 ~ 4473051 (-)