RNA id: TCONS_00046322


Basic Information

Item Value
RNA id TCONS_00046322
length 408
lncRNA type lincRNA
GC content 0.43
exon number 2
gene id XLOC_023421
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21330753 ~ 21369754 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTCCATAGGGGCATGGCGTGGCTTGACGCGTCGACCACATCGGCCACATTATTTATTTGAGGCAAACGCCATTATTCGGACAAGAATTTGAATTATTTCTTCAAGTGAAAGTCCACACCCTTGTCTCTGAATGTGAGCCAGTTCTGTCCAGCTCCACTGCCTCCAATATGGAGAATCCATTCCCCTGTTCCACCTCAGCGGGAACCACATGGATCCATTTCAACTCCGTCCAAAGACTCCTCAAAAGTTAGTCTGACCCTAAACGTTCCATATGACAAGCCAAAAACTTTACTAACTGCAATTATTGTGGTTTTTGTTTGTGTGCTCTAGTTGCAGGCATTGTCTGTGTGGAAAATTTGACTAGCTGTGATTGctgattaaattgttaaatactcctttatgaaaa

Function

GO:

id name namespace
GO:0090307 mitotic spindle assembly biological_process
GO:0046599 regulation of centriole replication biological_process
GO:0051310 metaphase plate congression biological_process
GO:0005813 centrosome cellular_component
GO:0005814 centriole cellular_component
GO:0005819 spindle cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

Ensembl:

ensembl_id ENSDART00000156537

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047176 lncRNA downstream 137040 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00046320 lncRNA downstream 137040 21228869 ~ 21231171 (-) True XLOC_023420
TCONS_00046319 lncRNA downstream 139258 21226533 ~ 21228953 (-) False XLOC_023420
TCONS_00046315 lncRNA downstream 228815 21137175 ~ 21139396 (-) False XLOC_023418
TCONS_00046291 lncRNA downstream 866910 20470778 ~ 20501301 (-) False XLOC_023407
TCONS_00046337 lncRNA upstream 242022 21611602 ~ 21620256 (-) True XLOC_023424
TCONS_00047177 lncRNA upstream 684229 22053809 ~ 22066831 (-) True XLOC_023442
TCONS_00046366 lncRNA upstream 701641 22071221 ~ 22074272 (-) False XLOC_023443
TCONS_00046367 lncRNA upstream 701641 22071221 ~ 22077479 (-) False XLOC_023443
TCONS_00046370 lncRNA upstream 754306 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00046321 mRNA downstream 24229 21330753 ~ 21343982 (-) False XLOC_023421
TCONS_00046318 mRNA downstream 109266 21206243 ~ 21258945 (-) False XLOC_023420
TCONS_00046317 mRNA downstream 196089 21154120 ~ 21172122 (-) True XLOC_023419
TCONS_00046313 mRNA downstream 218042 21131874 ~ 21150169 (-) False XLOC_023418
TCONS_00046314 mRNA downstream 218111 21132981 ~ 21150100 (-) False XLOC_023418
TCONS_00046323 mRNA upstream 1699 21371279 ~ 21471389 (-) False XLOC_023422
TCONS_00046324 mRNA upstream 2813 21372393 ~ 21470766 (-) False XLOC_023422
TCONS_00046325 mRNA upstream 2813 21372393 ~ 21487609 (-) False XLOC_023422
TCONS_00046326 mRNA upstream 2813 21372393 ~ 21490628 (-) False XLOC_023422
TCONS_00046328 mRNA upstream 2813 21372393 ~ 21498802 (-) False XLOC_023422
TCONS_00046316 other downstream 223911 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 709543 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046286 other downstream 836625 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 897121 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 1180781 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046357 other upstream 593472 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 594470 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 701641 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 939364 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 1002406 22371986 ~ 22372100 (-) True XLOC_023446

Expression Profile

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