RNA id: TCONS_00046329


Basic Information

Item Value
RNA id TCONS_00046329
length 4366
RNA type mRNA
GC content 0.47
exon number 36
gene id XLOC_023422
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21371279 ~ 21512425 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cccctctaaaaccaggttggtcaaccagctaaaaccagccaaccaacctaggctggtttaagctagatttttcagcagggatagcaccttttttttatatctttagCCCTGTCACTACCCAGCAAACGATTTtgtagatgtctaatagacatctaaacactgacagcttggctaaaacaaggctaaatttgggctatcagtgaaaatctaatagacatctaagaagaGCCCAAAATTAGAGTAGTCGTCAAATAGaccgattagacagactttacatgtgtagtcattcattctcACTAGTTTTAACCTATTCATAGACAtctagattttcactgacagctcaagtttagccttgttttaaccaAGACAACTTTGTTAagacgtctattaaacatctAGTAGAcgttgtttaaaaacaaaaaaaatgtttgctgggtATCCTTCAAAACACAACTCTTTTAAAGTAGGCCACATTAACATTTACCGTAATCACATGATATCATTTCATAAGTACAGGCTGGAGAAAGAATGTTGTTTCATTATTGTAGATGTAACATTATTTCACTCGCATTTTGTTTTCACAACAGTTattcaaactttaaaaaatgttattacaaAACACGTTACAGTGTTATTATGGGTGTATTACAGTGGAACTGTTTTAGCACACGTGGTAGTTGTCCGGACAGTTGTTTGTGTGGCTCCGTTGGTCCCATCTTGGCTACATTGTAATCAGAGCGCAGAGGAAAGAGAACTCGTCCATATTACAGCTGCTGTTTCAGGACCCGCGTGCTCGGCCACCGGCTACCGCAAGGCAGAGGATGAGATGTCCGGGACCACATCACAGGCGGACCCGGTAGATGCCACAGCGCGGACCGTGCTGCTCAACAGAGCCCAGACCACCAAATATTGTGACAACCATGTCAGCACGGCTAAATACGGGATCCTTACTTTCCTGCCTCGGTTCCTGTATGAGCAGATCAGGCGAGCAGCTAATGCTTTTTTCCTTTTCATCGCTCTTATGCAGCAAATCCCTGATGTCTCTCCGACGGGTCGCTACACGACTCTGGTGCCTCTTATCTTCATTCTGACAGTAGCAGGAATCAAGGAGATCATTGAGGATTATAAAAGGCATAAAGCAGACAACACGGTGAACAAGAAGAAGACAACAGTTCTGCGTAACGGAGCATGGCAGACCATCATATGGAAGCAGGTGGCAGTGGGAGACATAGTCAAGGTGACCAATGGGCAGCACCTCCCGGCTGACATGGTCATAGTGTCCTCCAGTGAGCCTCAGGCAATGTGTTACACTGAAACGTCCAACTTGGATGGAGAGACCAACTTAAAGATCAGACAGGGTCTCTCTCTGACAGCTAGTTTTCAGTCTTTGGAGGATCTGATAGCACTGTCAGGTCGTCTTGAATGTGAAGGTCCAAACAGACACTTGTACGACTTCACTGGAACACTGCGCTTAGACAACCACAACCCGGCTCCTCTTGGGCCTGACCAGGTGCTGTTACGAGGTGCTCAGCTCAGGAACACGCAGTGGGTTGTGGGAATTGTAGTTTACACTGGACATGATTCAAAACTTATGCAGAATTCCACTAAAGCTCCACTGAAGCGCTCTAATGTAGAGCGGGTAACAAACATGCAGATCCTGGTTCTGTTCGGGATTCTGCTGGTCATGGCGCTGGTCAGCTCTATTGGCGCCGCAATATggaacaaacagcacacagatgaAGCCTGCTGGTACCTTTCCAGAGCAGGTGACATCTCCCTCAACTTTGCCTACAATCTATTGACCTTCATCATCCTCTATAATAACCTGATCCCCATCAGCCTTCTGGTCACGCTAGAAGTGGTCAAATTCACACAGGCTCTCTTCATCAACTGGGATGTTGAGATGTATTACGCTGAGACCGACACTCCCGCTATGGCTCGAACGTCCAATCTGAATGAAGAACTCGGCCAAGTAAAATATCTATTTTCAGATAAAACCGGCACTCTCACCTGCAACGTCATGCACTTTAAGAAGTGCACGATAGCTGGAATTACATACGGGCACTTCCCAGACCTAGACTGCGATCGATCCATGGAGGACTTCAGTCATCTTCCCTCTACAAGTCATAATTCTACTGAGTTTGATGATCCTGCTCTTATCCAGAACATTGAGAAGAACCATccCACATCGCCACAGATTTGTGAGTTTTTGACCATGATGGCTGTTTGTCATACTGTTGTTCCTGAGAGAGAAGATAACCAAATTATCTACCAAGCTTCCTCACCAGATGAAGGAGCGCTGGTAAAAGGTGCCAAAAGTCTGGGCTTTGTTTTTACTGCACGAACGCCACATTCAGTCATCATAGAGGcggttagtgtgtgtgttttctcaccATTAATAAAGAACCAGAACTCTTTGTATGTTTCTCATGCAATGTCAAAATTACTTGTGTTCATTTTTCAGAGAGGAAAAGAGCAGACATATGAGCTTCTTAATGTACTGGAGTTTTCCAGcaatcGCAAGCGGATGTCAGTGATTGTCAGAACACCTACAGGCAATCTTCGACTTTATTGCAAGGGAGCGGACAATGTGATTTTTGAGCGTCTAAATGTGACGTCACAGTATAAGGAGTTGACCGTGGCTCATCTGGAGCAGTTTGCCACAGAAGGGCTGAGGACACTGTGTTTTGCGTATGTGGATCTCGAGGAGGGGGCCTATCTGGAATGGCTGAAGGAATACAATCGTATTAGCACTGTGTTAAAGGACCGAGCACAGAAACTGGAGGAGTGTTACGAACTCATAGAGAAGAACCTCCTGCTATTGGGTGCCACAGCGATTGAAGACCGGCTGCAAGCAGGAGTCCCAGAAACCATTGCAACACTCATGAGAGCCGACATCAAGATCTGGGTTCTGACCGGAGACAAGCAGGAGACGGCCATCAATATTGGTTACTCCTGCAGGCTGGTTTCACATGGCATGTCCCTCATCATCGTCAATGAAGATTCCCTGGATGCAACCAGGGCCACGCTGACGGCTCACTGCTCCTCTCTGGGTGACTCTCTGAGGAAGGAGAACGAGTTGGCGCTCATCATAGACGGACAGACGCTCAAATATGCCCTCTCTTTTGAAGTACGGCAGGCTTTTCTGGACCTTGCGCTGTCCTGTAAGGCCGTCATCTGCTGCAGAGTTTCACCATTACAGAAGTCGGAGATTGTGGACATGGTGAAAAAGCATGTAAAGGCCATAACGCTGGCTATCGGAGATGGAGCCAACGATGTGGGCATGATACAAACAGCACACGTGGGAGTGGGCATCAGTGGGAATGAAGGCATGCAGGCCACCAACTCATCTGACTACTCCATAGCTCAGTTCTCATACCTGGAGAAGCTTTTACTGGTTCATGGGGCCTGGAGTTACAACCGCGTCACTAAATGTATCCTGTACTGTTTCTATAAGAACGTGGTCCTTTACATTATAGAGCTTTGGTTTGCGTTTGTAAACGGTTTCTCTGGTCAGATCCTGTTTGAACGGTGGTGCATTGGCCTGTACAATGtgATCTTCACCGCTCTCCCTCCTTTCACACTCGGGATCTTTGACCGGCCGTGCAGCCAACAGAACATGATACGTTTCCCTCAGCTCTACCGCATCACGCAAAACGCAGAAGGTTTTAACACCAAGGTCTTTTGGGGTCACTGTATAAATGCTCTCATTCACTCCATTATTCTCTTCTGGTTTCCACTTAAAGCCTTGGAGCACGacaCTCCTTTCGACAACGGCAACAGTGTGGACTACCTGTTTGTGGGGAACATCGTCTACACGTATGTCGTGGTAACTGTATGTCTGAAAGCCGGTATGGAGACCACAGCATGGACAAGGTTTTCTCATCTAGCTGTCTGGGGCAGCATGGTGCTTTGGATGCTGTTTTTTGCCGTCTATTCTGCGATCTGGCCAACTATTCCTATAGCTCCGGATATGTTAGGCCAGGCTGGACGAGTGATGCAGTGCTGGAGCTTCTGGCTGGGTCTGATTCTCGTGCCAACAGCATGTTTACTCAAAGACGTGGTGTGGAATGCAGGAAGACGTACAGTGAGGAAGACCCTGTTGGAGGAGGTGCAGGAGCTGGAGGCACGGGCTGTGGACCCTGGAGCAGCCGTTCTCAGAGATGCCAGCGGCCGCAGTCTGAACGAGCGTGCCCACCTGCTGACACGGGTCTTCAGAAAAACGCCTTCCAGCGTGGGACGCTCCAACTCGGTGCAGCAGACCGTGTCACATGGATATGCGTTCTCACAGGAGGAGCATGGTGTGGTCTCTCAGTCGCAGGTCGTCCGCTCCTACGACACTACCCGCCAGCGGCCTAGTCTGTAG

Function

GO:

id name namespace
GO:0015914 phospholipid transport biological_process
GO:0048666 neuron development biological_process
GO:0045332 phospholipid translocation biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100209-2 Predicted to enable ATPase-coupled intramembrane lipid transporter activity. Predicted to be involved in neuron development and phospholipid translocation. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in cerebellar ataxia, mental retardation and dysequlibrium syndrome. Orthologous to human ATP8A2 (ATPase phospholipid transporting 8A2).

Ensembl:

ensembl_id ENSDART00000184857

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046855 lncRNA downstream 2639 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046322 lncRNA downstream 2813 21368211 ~ 21369580 (-) True XLOC_023421
TCONS_00047176 lncRNA downstream 141222 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00046320 lncRNA downstream 141222 21228869 ~ 21231171 (-) True XLOC_023420
TCONS_00046319 lncRNA downstream 143440 21226533 ~ 21228953 (-) False XLOC_023420
TCONS_00046337 lncRNA upstream 99177 21611602 ~ 21620256 (-) True XLOC_023424
TCONS_00047177 lncRNA upstream 541384 22053809 ~ 22066831 (-) True XLOC_023442
TCONS_00046366 lncRNA upstream 558796 22071221 ~ 22074272 (-) False XLOC_023443
TCONS_00046367 lncRNA upstream 558796 22071221 ~ 22077479 (-) False XLOC_023443
TCONS_00046370 lncRNA upstream 611461 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00046321 mRNA downstream 28411 21330753 ~ 21343982 (-) False XLOC_023421
TCONS_00046318 mRNA downstream 113448 21206243 ~ 21258945 (-) False XLOC_023420
TCONS_00046317 mRNA downstream 200271 21154120 ~ 21172122 (-) True XLOC_023419
TCONS_00046313 mRNA downstream 222224 21131874 ~ 21150169 (-) False XLOC_023418
TCONS_00046333 mRNA upstream 71649 21584074 ~ 21588914 (-) False XLOC_023423
TCONS_00046334 mRNA upstream 73885 21586310 ~ 21587335 (-) True XLOC_023423
TCONS_00046335 mRNA upstream 87895 21600320 ~ 21620316 (-) False XLOC_023424
TCONS_00046336 mRNA upstream 91163 21603588 ~ 21637183 (-) True XLOC_023425
TCONS_00046338 mRNA upstream 133892 21646317 ~ 21674996 (-) False XLOC_023426
TCONS_00046316 other downstream 228093 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 713725 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046286 other downstream 840807 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 901303 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 1184963 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046357 other upstream 450627 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 451625 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 558796 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 796519 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 859561 22371986 ~ 22372100 (-) True XLOC_023446

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00016564 True 2930 mRNA 0.57 24 CM030122.1 24973047 ~ 25001455 (-)