RNA id: TCONS_00046331


Basic Information

Item Value
RNA id TCONS_00046331
length 4578
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_023422
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21371279 ~ 21512425 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGTTTGTGTGGCTCCGTTGGTCCCATCTTGGCTACATTGTAATCAGAGCGCAGAGGAAAGAGAACTCGTCCATATTACAGCTGCTGTTTCAGCGGTTTCTGTGGTGATGGACCCTCCCGGCGGCCGAGACGAGCGTCATCGTCAAGCAGAGCGGCTTCGGCGGGAGGAGGCATACTATCACTTCATTAATGAACTGAGTGAGGAGGAGTACAGACTAATGAGAGACAGCAATTTACTGGGAACGCCTGGTGAAGTCACAGCAGAAGAGCTGAGGCAACGTCTGGATGGTGCAAAGGAGAGAGTGTCATCTCAGCCACGCCCTGAACCACGCCCACAGAGCAGTGAGGCAGAGGGCAGTAGTGGTGTGGTCGAGCCAGGTTCCGAGACATCTAATGGAGACTCCCTGCTGGAGTGGTTGAACACATTCCGGCGCACAGGAAATGCCACACGTAGCGGGCAGAGCGGAAACCAAACTTGGCGTGCCGTCAGCCGCACCAACCCCAACAGTGGCGAGTTCCGCTTTAGTCTGGAGATTAACATCAACCACGAGCAGCCCGAGCCTGGTGAACACAGCGACACCCCTGACCCAACTGATCTTCCAATGcctccccctcctcctcctccccctccccctcctcctcctcctccagtgcAATCTGCCTCTCCACCCACAACCCCTTACAACCCTTCAAGGGCTGCACCCTACTCACTTCAACACCCCACGCCGTACTCCACGAGCAGACCCACCCTGGGAAGAAGAGGCGCAGTGCGCCGCACTCGCAGTAGCACCACTCCGCCTGTAATGCCCCCTATGACCTCACAGGCTCCTCCCATGCCTCTGAGAAGGAACTTGCCTACTTTGCCAAGCTCTCCACCTCCACAGGCTCCACTTGCTTTTCAGTCACAGGAGACGGATGGTGGTGCTGTTCGGAGTCAAATACAGGTCACGACCTCCTCAGTCAATACAGGAGTGGAGCAGAATGGAAGTGAAGGCCCAGACTGCCCTAATGTTCAGCCTCAGTCTGACCCCCAGGTGGCGCCAGCTGCCCGTGAGCCACGAAACAGTAGGACTCGTTCACGTGGTCGTGTGCGCCGGGCAGCAGGTGCCGGAGGGGCTTTATCTCGTTCTTCGAGAAGAAGCCGCTCGCCTCTGGACAGAAACACCGCCTCCAGTGTTAGTCCCAcccacagcagcagcagcagcaccccCCCAGTGGAGTCTGCTGGGAGTACAGCTGTTAGTATGGAGATGGGCCAACCCACCGCAGAGCCAACTGCTCCTACAGATCCTCCAGAGGCAGGTGAGGAAGAGGGAGAGACGCCTGTATCAGGTGCTGGAGGTGTTCGTCGTCACCCCACAATCATGCTGGACCTGCAAGTGCGGCGCATCAGGCCAGGAGAGAACCGGGACAGAGACAGCATCGCCAGCCGCACGCGCTCTCGTGCTCGGGCTGCTGAAAACACAGTCACCTTCGAAAGCGACAGCGGTGGCTTCCGGAGAACAATCTCACGCTCAGAGCGTGCGGGTATTCGCACTTACGTCAGCACTATACGCATCCCATTGCGGCGCATTTCTGAGACAGGCCTCGGCGAGCCCAGCTCCATGGCATTGCGATCTATTCTTCGCCAGATTATGACCGGCTTTGGTGAGCTCAGCTCCCTCATGGAGACGGAAGCAGATTCAGAGACTGCGACGCCCAGCCAGGACTCTGCTCCCGCTGCTGGAGCCCAGACATATCGCGCTGCTGGTGCAGAGGGTGGAGCCACCCATGGCGGAGTTGAATCAGCACGGGAAACTTTAGGGGAGGGTGAGGAGGAAGGACAAGTGCGGGTGAGCAGGACTGGGCCGGAGGGACGACCTAGCAGCAGAGACACTAACAACCTAGTGGAAAATGGCACATTGCCCATCCTAAGGCTTGCACACTTTTTTCTTCTcaatgaagatgaagatgaggagCACCCACGGGGCCTCACCAAAGAACAGATCGACAATCTGGTCACACGCACTTACGGTCAGGTCAACCTGGAGGGTGAGCAGGGCCGCGCTTGCAGCGTTTGCATCAATGAGTACGCGCAGGGCAACAAGCTGCGCCGCTTACCATGCGCCCACGAGTTCCACATCCACTGCATCGACCGCTGGCTCTCTGAAAACAACACCTGCCCCATCTGCAGGCAGCCCATCCTGTCCAGCCATCAGGAATGATGTCAGGCTGTAGCTATCAATCAACAGACTGAACCAGTGACTTTTATTCTGCCGTCGGTGGCAGCTGTACATAGTGCTTCAATGTTTTCATTCTCTGAGATCCATTGTATTCAAGCTAAAGGTAGAACCAAAAGCAGAAAAAGACTATAATGCAGAGATTTaacaaagctttatttttttagacTCCTTTTGTTTTCCTCTTCTTCCATTTTCCATTAAGCTTTGCGGAAACATTAACAGATGGCATGACTAACTTGGATGGAGTTAGGAATGTTAACTTCTGCTAAAGTTGCAGtcacaattaaagggatagttcacccaaagtgtgaaaatcatttcttttatttacttgttccaaaccagtttgagttttaaaggtgttttaaaggatgttggaaacctttaaccattgacatccatgctttttgtttttctgactattgatgtcagtggttaccggtttccaacattcttcaaaacatcttttgtgttcaacattaaCTGCTTTGGAACGAgacaaggatgagtaaatgatagaataatgaattatttttcGATGAACTATCCTCTTAATATTGTTCAGTAAATTTTTGCAGGCAAAATTCAATCATTTCAATCCTCATGAAATATTAGGTGGATTTCACAACAGATTCACCTTGTTGAACAACAGTTCGATGATTTGACAAGTGACATGATTTGACTCCTAGTAAGTGGTGCTTCACACATCACTACCCTGTGGACTTTTTTACCTGCGAAATTTGGCGAATGTGACTGCACCTTAATTCTGTCTCACAAATGTAAGGTTTGGTGGCTTCAAAAAAAGGACAGACCTCTTAAAACTCTTTAAAAGATATGTAAATATATGAATGTCTGTGTTTTCAGTTTTAACAGTAAGACATATTCTATCGGTTCATTTGCATTTTCAAAAGAAACGTTTACTTTTTAAGCGCTTGCAGAGAAATCCAACGGTTTTGAAGCTCTATGAGTCCTCCATGTAAATGCTCCGCAATGTTGGGCAGCGTTCTTTTAAATGCGTTTTCAATCAGAGCAAGTTTTTAGTGCGATTTTTATGGGATACAAATGGGATATGAATGATGAATCCGGTTGTAAATGAACTTTCCATGGAAGTTCCACAATTCCAATCTTTTTATTACGGGAAACTGCAATCTCTCCAAACactacaaaacacttttttttttcttaaaagcgatagttcacccagaaataaaACATCAGATATCCTGAAGAATGATAGAAACCAGCAGCTTTTGACATCCTAGAAACAAATATACAATGGAAGTGGATGGTTGCTGCTTTCCCAACATTCTCAAAAtctcttcctttgtgttcaaaagaaaaacgAAACTAAAACAGGGTTGTGGCAAGTGAAGGGTAAGGAAATAATGGCAGttttaaattttgggtgaactactcttTTAAGTGTGGTCCTTAATTTTCTTATAGGTACAGACTATGCTTTCCTCTTTGAGTGTCATTACATTTCTAATGCGAACAAGTCATTTGCATTCGAACATGATACAGATGAGCTAGTAAGTGCATGCTTGAGTTGTACCTGCGTATAAACCCATTAAATGTTCTAATCATTTATCACTCGAAAGCACTTGTCAGCCACTGCACTATAGGCAGTACATCGAAGCCTGTTAAAAGCTAGACGTCTTCTGGGGTGATGCAGTGATACAAGCAGGCAATGAATTGTTGACAGCCAGTTAAGTTTTCCTCTGTTTACCCTTCAGGTTTAgccattttgattgtttttatcatcacatgcTTCATACCTCACACACGTTCTGCCCTGCTTTTCCCTTCCCTCAGTATTTTATCACACCGTTTCACTTATGGCCTTGTCTAATTCAACATTTTCCATCCTTCATGCAGTGTTGCTTGTTCCTCATGTGAGGCAGTAGGACTTCCGAATGAATGATCTTGAATGTAGTTGTACCTTGCGTCTTTCCAAGGTAcactttttcgttttttttttttcttcctcgaTGTACAATAGATGTCTGCTTATGTTTCCGGATTAAAACAAAGACTAAATCTGTTATTCGACAACTGTCCTCAATGTTATTGTTTTCTTGTATACTAAAATATCCCTTTATTTTGTCTGTATGTTGTGAGGATGTGCGTATGCTATGTTTGAAGTgtgaattgtatgtgtgtgtgttttgctgaaTGGATCAGAATGGTTCTTGAGCTGATGTGGGGGATCGTTGGCCATGAAGTTTAGATATTTAATGATGAAACATTGACATCATTGAGCTATGATGACTATGTATTATGTTATAATGTGATGCTAAAACAGAAGAATATGTATTCTGTTactatgtaataaaataaaacacatgatttttt

Function

GO:

id name namespace
GO:0015914 phospholipid transport biological_process
GO:0048666 neuron development biological_process
GO:0045332 phospholipid translocation biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100209-1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in positive regulation of transcription, DNA-templated; protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be active in cytoplasm and nucleoplasm. Human ortholog(s) of this gene implicated in esophageal cancer and squamous cell carcinoma. Orthologous to human RNF6 (ring finger protein 6).

Ensembl:

ensembl_id ENSDART00000109587

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046855 lncRNA downstream 132088 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046322 lncRNA downstream 132262 21368211 ~ 21369580 (-) True XLOC_023421
TCONS_00047176 lncRNA downstream 270671 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00046320 lncRNA downstream 270671 21228869 ~ 21231171 (-) True XLOC_023420
TCONS_00046319 lncRNA downstream 272889 21226533 ~ 21228953 (-) False XLOC_023420
TCONS_00046337 lncRNA upstream 99865 21611602 ~ 21620256 (-) True XLOC_023424
TCONS_00047177 lncRNA upstream 542072 22053809 ~ 22066831 (-) True XLOC_023442
TCONS_00046366 lncRNA upstream 559484 22071221 ~ 22074272 (-) False XLOC_023443
TCONS_00046367 lncRNA upstream 559484 22071221 ~ 22077479 (-) False XLOC_023443
TCONS_00046370 lncRNA upstream 612149 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00046328 mRNA downstream 3040 21372393 ~ 21498802 (-) False XLOC_023422
TCONS_00046327 mRNA downstream 3040 21372393 ~ 21498802 (-) False XLOC_023422
TCONS_00046326 mRNA downstream 11214 21372393 ~ 21490628 (-) False XLOC_023422
TCONS_00046325 mRNA downstream 14233 21372393 ~ 21487609 (-) False XLOC_023422
TCONS_00046323 mRNA downstream 30453 21371279 ~ 21471389 (-) False XLOC_023422
TCONS_00046333 mRNA upstream 72337 21584074 ~ 21588914 (-) False XLOC_023423
TCONS_00046334 mRNA upstream 74573 21586310 ~ 21587335 (-) True XLOC_023423
TCONS_00046335 mRNA upstream 88583 21600320 ~ 21620316 (-) False XLOC_023424
TCONS_00046336 mRNA upstream 91851 21603588 ~ 21637183 (-) True XLOC_023425
TCONS_00046338 mRNA upstream 134580 21646317 ~ 21674996 (-) False XLOC_023426
TCONS_00046316 other downstream 357542 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 843174 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046286 other downstream 970256 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 1030752 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 1314412 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046357 other upstream 451315 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 452313 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 559484 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 797207 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 860249 22371986 ~ 22372100 (-) True XLOC_023446

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_04557779_04561445.mRNA True 2708 mRNA 0.54 4 CI01000018 4557636 ~ 4561997 (-)