RNA id: TCONS_00046332


Basic Information

Item Value
RNA id TCONS_00046332
length 2097
RNA type mRNA
GC content 0.59
exon number 3
gene id XLOC_023422
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21371279 ~ 21512425 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACCCTCCCGGCGGCCGAGACGAGCGTCATCGTCAAGCAGAGCGGCTTCGGCGGGAGGAGGCATACTATCACTTCATTAATGAACTGAGTGAGGAGGAGTACAGACTAATGAGAGACAGCAATTTACTGGGAACGCCTGGTGAAGTCACAGCAGAAGAGCTGAGGCAACGTCTGGATGGTGCAAAGGAGAGAGTGTCATCTCAGCCACGCCCTGAACCACGCCCACAGAGCAGTGAGGCAGAGGGCAGTAGTGGTGTGGTCGAGCCAGGTTCCGAGACATCTAATGGAGACTCCCTGCTGGAGTGGTTGAACACATTCCGGCGCACAGGAAATGCCACACGTAGCGGGCAGAGCGGAAACCAAACTTGGCGTGCCGTCAGCCGCACCAACCCCAACAGTGGCGAGTTCCGCTTTAGTCTGGAGATTAACATCAACCACGAGCAGCCCGAGCCTGGTGAACACAGCGACACCCCTGACCCAACTGATCTTCCAATGcctccccctcctcctcctccccctccccctcctcctcctcctccagtgcAATCTGCCTCTCCACCCACAACCCCTTACAACCCTTCAAGGGCTGCACCCTACTCACTTCAACACCCCACGCCGTACTCCACGAGCAGACCCACCCTGGGAAGAAGAGGCGCAGTGCGCCGCACTCGCAGTAGCACCACTCCGCCTGTAATGCCCCCTATGACCTCACAGGCTCCTCCCATGCCTCTGAGAAGGAACTTGCCTACTTTGCCAAGCTCTCCACCTCCACAGGCTCCACTTGCTTTTCAGTCACAGGAGACGGATGGTGGTGCTGTTCGGAGTCAAATACAGGTCACGACCTCCTCAGTCAATACAGGAGTGGAGCAGAATGGAAGTGAAGGCCCAGACTGCCCTAATGTTCAGCCTCAGTCTGACCCCCAGGTGGCGCCAGCTGCCCGTGAGCCACGAAACAGTAGGACTCGTTCACGTGGTCGTGTGCGCCGGGCAGCAGGTGCCGGAGGGGCTTTATCTCGTTCTTCGAGAAGAAGCCGCTCGCCTCTGGACAGAAACACCGCCTCCAGTGTTAGTCCCAcccacagcagcagcagcagcaccccCCCAGTGGAGTCTGCTGGGAGTACAGCTGTTAGTATGGAGATGGGCCAACCCACCGCAGAGCCAACTGCTCCTACAGATCCTCCAGAGGCAGGTGAGGAAGAGGGAGAGACGCCTGTATCAGGTGCTGGAGGTGTTCGTCGTCACCCCACAATCATGCTGGACCTGCAAGTGCGGCGCATCAGGCCAGGAGAGAACCGGGACAGAGACAGCATCGCCAGCCGCACGCGCTCTCGTGCTCGGGCTGCTGAAAACACAGTCACCTTCGAAAGCGACAGCGGTGGCTTCCGGAGAACAATCTCACGCTCAGAGCGTGCGGGTATTCGCACTTACGTCAGCACTATACGCATCCCATTGCGGCGCATTTCTGAGACAGGCCTCGGCGAGCCCAGCTCCATGGCATTGCGATCTATTCTTCGCCAGATTATGACCGGCTTTGGTGAGCTCAGCTCCCTCATGGAGACGGAAGCAGATTCAGAGACTGCGACGCCCAGCCAGGACTCTGCTCCCGCTGCTGGAGCCCAGACATATCGCGCTGCTGGTGCAGAGGGTGGAGCCACCCATGGCGGAGTTGAATCAGCACGGGAAACTTTAGGGGAGGGTGAGGAGGAAGGACAAGTGCGGGTGAGCAGGACTGGGCCGGAGGGACGACCTAGCAGCAGAGACACTAACAACCTAGTGGAAAATGGCACATTGCCCATCCTAAGGCTTGCACACTTTTTTCTTCTcaatgaagatgaagatgaggagCACCCACGGGGCCTCACCAAAGAACAGATCGACAATCTGGTCACACGCACTTACGGTCAGGTCAACCTGGAGGGTGAGCAGGGCCGCGCTTGCAGCGTTTGCATCAATGAGTACGCGCAGGGCAACAAGCTGCGCCGCTTACCATGCGCCCACGAGTTCCACATCCACTGCATCGACCGCTGGCTCTCTGAAAACAACACCTGCCCCATCTGCAGGCAGCCCATCCTGTCCAGCCATCAGGAATGA

Function

GO:

id name namespace
GO:0015914 phospholipid transport biological_process
GO:0048666 neuron development biological_process
GO:0045332 phospholipid translocation biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100209-1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in positive regulation of transcription, DNA-templated; protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be active in cytoplasm and nucleoplasm. Human ortholog(s) of this gene implicated in esophageal cancer and squamous cell carcinoma. Orthologous to human RNF6 (ring finger protein 6).

Ensembl:

ensembl_id ENSDART00000170984

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046855 lncRNA downstream 134461 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046322 lncRNA downstream 134635 21368211 ~ 21369580 (-) True XLOC_023421
TCONS_00047176 lncRNA downstream 273044 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00046320 lncRNA downstream 273044 21228869 ~ 21231171 (-) True XLOC_023420
TCONS_00046319 lncRNA downstream 275262 21226533 ~ 21228953 (-) False XLOC_023420
TCONS_00046337 lncRNA upstream 103975 21611602 ~ 21620256 (-) True XLOC_023424
TCONS_00047177 lncRNA upstream 546182 22053809 ~ 22066831 (-) True XLOC_023442
TCONS_00046366 lncRNA upstream 563594 22071221 ~ 22074272 (-) False XLOC_023443
TCONS_00046367 lncRNA upstream 563594 22071221 ~ 22077479 (-) False XLOC_023443
TCONS_00046370 lncRNA upstream 616259 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00046328 mRNA downstream 5413 21372393 ~ 21498802 (-) False XLOC_023422
TCONS_00046327 mRNA downstream 5413 21372393 ~ 21498802 (-) False XLOC_023422
TCONS_00046326 mRNA downstream 13587 21372393 ~ 21490628 (-) False XLOC_023422
TCONS_00046325 mRNA downstream 16606 21372393 ~ 21487609 (-) False XLOC_023422
TCONS_00046324 mRNA downstream 33449 21372393 ~ 21470766 (-) False XLOC_023422
TCONS_00046333 mRNA upstream 76447 21584074 ~ 21588914 (-) False XLOC_023423
TCONS_00046334 mRNA upstream 78683 21586310 ~ 21587335 (-) True XLOC_023423
TCONS_00046335 mRNA upstream 92693 21600320 ~ 21620316 (-) False XLOC_023424
TCONS_00046336 mRNA upstream 95961 21603588 ~ 21637183 (-) True XLOC_023425
TCONS_00046338 mRNA upstream 138690 21646317 ~ 21674996 (-) False XLOC_023426
TCONS_00046316 other downstream 359915 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 845547 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046286 other downstream 972629 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 1033125 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 1316785 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046357 other upstream 455425 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 456423 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 563594 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 801317 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 864359 22371986 ~ 22372100 (-) True XLOC_023446

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00016562 False 2160 mRNA 0.72 3 CM030122.1 25010808 ~ 25013478 (-)