RNA id: TCONS_00046334


Basic Information

Item Value
RNA id TCONS_00046334
length 1026
RNA type mRNA
GC content 0.55
exon number 1
gene id XLOC_023423
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21584074 ~ 21588914 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGTGAAGAGGTGTCAGTTTCTCCAAGCTGGCTGGCTCAAGAACCCACCTGGGGCAGCAGCGGCGCGGGGAGCATAGAGAACATCACTGTGGGAACATACTCACCGGCGGTCATCCTGCCAGCGAGACCACCTACGGAGCTGCTGGTGAACCCGTGGGACATCGTACTCTGTTCATCTGGCACCCTCATCGCCTGTGAAAACGCCCTGGTGGTTTTGGTCATCTGGCAGAACCCGGCTTTACGCGCTCCGATGTTTCTACTGATCGGCAGTCTAGCTCTAGCTGACCTATTGGCTGGTTTGGGATTAGTCCTGCACTTTACTTTCGCATACCTACTGCGCTCTGATTCAGCCCAGCTGTTGACTGTAGGTCTGGTGGTGGCGTCCTTCTCCGCATCAGTTTTCAGCCTGCTGGCCATCACCATTGACCGCTACCTGTCGCTGTACTACGCCCTCACCTACAACTCCGAACGAACTGCCGCCTTCACATACACCATGCTGGTGCTTCTATGGGGCGTTTCCTTGTGTTTGGGTTTGCTCCCAGTCACCGGTGTTAACTGCTTAGGGCAGGAGGTAAACTGCAGCGTGGTGTGGCCCCTAACGAAAAACAACGTGGCCGTTTTATCCGTGTCCTTCCTTCTACTCTTCGGCCTCATGCTACAACTCTATGTGCAGATCTGCAAAATCGTCATGCGGCATGCGCACCAAATTGCCCTCCAGCACCACTTTTTAGCAGCAAGCCCTCATTACGTCACGACGCGTAAAGGCGTATCCACGCTGGCGATAATTCTGGGCACATTCGCTGCCTGCTGGATGCCGTTTACTGTATACTCGCTCATAGCCGATTATACATACCCACCGCTCTACACGTACGCCACCCTGGTGCCCGCCACCTACAACTCAGTCATCAACCCAGTCATTTACGCATTCCGCAATCAAGAGATCCAGAAAGCGTTGTGGCTGGTGTGCTGTGGATGTATCCCTGCCAGCGTGGCCCATCGGGCACGGACCCCCAGCGACGTCTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-100209-3 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and regulation of metabolic process. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human GPR12 (G protein-coupled receptor 12).

Ensembl:

ensembl_id ENSDART00000091528

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046855 lncRNA downstream 216556 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046322 lncRNA downstream 216730 21368211 ~ 21369580 (-) True XLOC_023421
TCONS_00047176 lncRNA downstream 355139 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00046320 lncRNA downstream 355139 21228869 ~ 21231171 (-) True XLOC_023420
TCONS_00046319 lncRNA downstream 357357 21226533 ~ 21228953 (-) False XLOC_023420
TCONS_00046337 lncRNA upstream 24267 21611602 ~ 21620256 (-) True XLOC_023424
TCONS_00047177 lncRNA upstream 466474 22053809 ~ 22066831 (-) True XLOC_023442
TCONS_00046366 lncRNA upstream 483886 22071221 ~ 22074272 (-) False XLOC_023443
TCONS_00046367 lncRNA upstream 483886 22071221 ~ 22077479 (-) False XLOC_023443
TCONS_00046370 lncRNA upstream 536551 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00046329 mRNA downstream 73885 21372393 ~ 21512425 (-) False XLOC_023422
TCONS_00046331 mRNA downstream 74573 21501842 ~ 21511737 (-) False XLOC_023422
TCONS_00046332 mRNA downstream 78683 21504215 ~ 21507627 (-) True XLOC_023422
TCONS_00046328 mRNA downstream 87508 21372393 ~ 21498802 (-) False XLOC_023422
TCONS_00046327 mRNA downstream 87508 21372393 ~ 21498802 (-) False XLOC_023422
TCONS_00046335 mRNA upstream 12985 21600320 ~ 21620316 (-) False XLOC_023424
TCONS_00046336 mRNA upstream 16253 21603588 ~ 21637183 (-) True XLOC_023425
TCONS_00046338 mRNA upstream 58982 21646317 ~ 21674996 (-) False XLOC_023426
TCONS_00046339 mRNA upstream 58984 21646319 ~ 21674950 (-) True XLOC_023426
TCONS_00046340 mRNA upstream 99941 21687276 ~ 21689146 (-) True XLOC_023427
TCONS_00046316 other downstream 442010 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 927642 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046286 other downstream 1054724 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 1115220 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 1398880 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046357 other upstream 375717 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 376715 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 483886 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 721609 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 784651 22371986 ~ 22372100 (-) True XLOC_023446

Expression Profile

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