RNA id: TCONS_00046335


Basic Information

Item Value
RNA id TCONS_00046335
length 1853
RNA type mRNA
GC content 0.49
exon number 9
gene id XLOC_023424
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21600320 ~ 21620316 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCACGGGGACTCCTCTTCGCCTCCGCGCGGTGATTGGGTGGAAGATGGCGCTGGGCGAATGGAAATCCTAATGACAGTTTCCAAATTTGCCTCTTTTTGTACCATGGGCGCCAATGCCTCCGCTTTGGAGAAAGAGATCGGCTCGGAGCAGTTCCCAGTCAACGAGCATTACTTCGGATTGGTCAACTTCGGAAACACCTGCTACTGTAACTCTGTGCTCCAGGCTCTGTACTTCTGCCGGCCGTTTCGGGAGAAGATCCTCGCGTACAGGAGTCAACCGCGCCGCAAGGAGAACCTGCTCACCTGCCTGGCTGACCTGttccacagtatagccaaccagAAGAGGAAAGTTGGCGTTATACCGCCGAAGAAGTTCATTACGCGACTACGGAAAGAGAATGAACTGTTTGATAACTACATGCAGCAAGATGCACATGAGTTTCTCAACTACCTGCTGAACACTATAGCAGATCTGCTCCAAGAAGAGCGCAAACAAGACAAGCAGAATGGCAAGCTTGCCAACGGCACACTCGATTCCCAGAACAATAACAGCACCCCACCCTCCACCACCTGGGTTCATGAGATCTTCCAGGGCACGTTGACCAATGAGACGCGATGCCTCACCTGCGAAACGATAAGCAGCAAAGATGAGGATTTCTTGGATTTGTCAGTGGACGTGGAGCAGAACACTTCAATCACGCACTGTCTCAGAGGTTTCAGTAATACAGAGACGTTGTGCAGTGAATATAAATATTACTGTGAGGAATGCAGAAGTAAACAGGAGGCACACAAACGAATGCGGGTTAAGAAACTTCCCATGATCCTCGCCTTGCACTTGAAGAGATTTAAATACATGGAGCAGCTGCAGCGCTACACTAAGCTAAGCTACCGTGTGGTCTTCCCTCTGGAGCTCCGCCTCTTTAACACCTCTGGTGACGCCACCAATCCCGAGAGGCTTTACGACCTGGTCGCTGTGGTGGTGCATTGTGGCAGTGGTCCAAACCGAGGACACTACATCGCAATTGTAAAAAGTCATGATTTCTGGCTACTGTTTGATGACGACATTGTAGAGAAAATCGATGCCCAGGCGATTGAAGAGTTCTACGGATTAACCTCGGAAATTTCCAAGAACTCTGAGTCCGGCTACATCCTGTTTTACCAGTCCAGAGACTGAGCGCGGCCTGAGTGAGGCCAGAGTGGCGTCCCGTTACGGACACCTGTGCAGCAGCAGCGGCGGTGGCACGTCTGTGTGCAGAAGAGCCTGCAGCGgcgcctccacacacacacacccaaacccCACCCGTCCCAGCCCTCCCTCGCCGACCTCCACGCAGCAGCAACGTTGGACGCGATGCGGTCGCAAGGCCTTTTGAACGTTGTTTGTCAGTTGTATTTACGTTGTGGGAGCGTTTCATCACtcgtgttcagtcctttactgtAGAGAGAATGTGTTTTAATGTGACAGACTGGGATTTGCATTCAACTTTCATGCTGCGACCTTTTGATTCCTGTGGCTGTGAGGAGGCTGAAGACATGTGCATGGGGGGAATAGCGGGTGTGTTTATTAAAGCGGCGGGGAGGGTCTAAACGCTCCGGGTGCGGGGCATTGCGGGTTATGTATTTCTACCTTGTACAGAGTgatatttgtataaatattatgagaattataataatattactgatATAGCCAAAAAAGAGGATAGAACCAGAAAAAGATGTATAACACTATGGTGCACTTTTGATACAGTTTTGTAGATGTTGGAAGGTTCATGTGAGGGTTTGCTTGAGACGGCCTGTTGTGAAATTATCATTTtctgttttaaagaaaaagaaataaaagtgtATACACCAA

Function

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060228-3 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human USP12 (ubiquitin specific peptidase 12).

Ensembl:

ensembl_id ENSDART00000112670

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046855 lncRNA downstream 230566 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046322 lncRNA downstream 230740 21368211 ~ 21369580 (-) True XLOC_023421
TCONS_00047176 lncRNA downstream 369149 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00046320 lncRNA downstream 369149 21228869 ~ 21231171 (-) True XLOC_023420
TCONS_00046319 lncRNA downstream 371367 21226533 ~ 21228953 (-) False XLOC_023420
TCONS_00047177 lncRNA upstream 433493 22053809 ~ 22066831 (-) True XLOC_023442
TCONS_00046366 lncRNA upstream 450905 22071221 ~ 22074272 (-) False XLOC_023443
TCONS_00046367 lncRNA upstream 450905 22071221 ~ 22077479 (-) False XLOC_023443
TCONS_00046370 lncRNA upstream 503570 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00046373 lncRNA upstream 1070667 22690983 ~ 22701598 (-) False XLOC_023444
TCONS_00046333 mRNA downstream 11406 21584074 ~ 21588914 (-) False XLOC_023423
TCONS_00046334 mRNA downstream 12985 21586310 ~ 21587335 (-) True XLOC_023423
TCONS_00046329 mRNA downstream 87895 21372393 ~ 21512425 (-) False XLOC_023422
TCONS_00046331 mRNA downstream 88583 21501842 ~ 21511737 (-) False XLOC_023422
TCONS_00046332 mRNA downstream 92693 21504215 ~ 21507627 (-) True XLOC_023422
TCONS_00046338 mRNA upstream 26001 21646317 ~ 21674996 (-) False XLOC_023426
TCONS_00046339 mRNA upstream 26003 21646319 ~ 21674950 (-) True XLOC_023426
TCONS_00046340 mRNA upstream 66960 21687276 ~ 21689146 (-) True XLOC_023427
TCONS_00046341 mRNA upstream 71623 21691939 ~ 21713883 (-) True XLOC_023428
TCONS_00046342 mRNA upstream 130494 21750810 ~ 21808816 (-) False XLOC_023429
TCONS_00046316 other downstream 456020 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 941652 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046286 other downstream 1068734 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 1129230 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 1412890 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046357 other upstream 342736 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 343734 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 450905 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 688628 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 751670 22371986 ~ 22372100 (-) True XLOC_023446

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_04604468_04611851.mRNA True 1913 mRNA 0.48 9 CI01000018 4603787 ~ 4611851 (-)