RNA id: TCONS_00046338


Basic Information

Item Value
RNA id TCONS_00046338
length 2870
RNA type mRNA
GC content 0.54
exon number 11
gene id XLOC_023426
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21646317 ~ 21674996 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACACCGCTCCAAGAAAGATACGGGGGTGTTTTGACGTGCGGATGCGGCTCGGGGAAGCTGCGGTGGATGTGATTGAGCTCCATGATTCTCCCCTCTCGGGGCCAGAGTTCACAGCATCCGAGAAGAACGCGAATAGAGTGATGTCACTGTGCCTGCCAGGGGGTGGTCGTCCCCTGCCGGAGTCGCACAGCCTCTGACGCCCGCGGGATGGACTGAGTGAGTGTAGCCAAAGCCGAGAGCAATGGGCAGTCTGGGAGAGGGAGTGGACCCGGGCATGGTGAGCGAAGCTCTTCTGGAGGCCCTTTGCTCTGAATGTGGACAGATTCACCGCACCTGGGAGAACCACCTTTATAACTATCGTTTGGAAGTGGATGATGATTTGGTGTGCCACATCTGCCTTCAGCCGTTAGTTCAGCCCCTGGATACACCATGTGGCCACACCTTCTGTGCCCGCTGTCTGCGCAGCTTCCTGCAGGAACGGGACTTCTGTCCACTGGACCGTGCGCATCTGCAGCTGCAGGTCTGCCGGCGCTCCAGCATTCTGGTGCACAAGCTGCTGGACAAGTTGTCGGTCACCTGTCCGCTCACGCCCTCCTGCTCGCTCAGCATGCCTCGCTGCGACCTGGAGGCACATCTCAAACACAGGTGTCCTGGAACACAGAGTCAGCGAACAAAGCTAGAGCGGACGCAGATGGAGGGAAGTGAGGACAGGGTCACAGCGACCAATCCCCCCAAATCCCCCCAGACTGAGATAAAGGAAGACACGCCATCACCACCTGCTGGATCCAATGCATGCAACAATGTTCCTACATGGACAGAAGAGCCTGGTATAGACAACCCTGCCTTTGAAGAAAGCACAGAAGAAGACAgTGTTCATGGTCTTGAGTGTGCTCTTCCACGTGTGAAGCGTCCTCTCAGCAACCCATGCATTCATCTTCTTCGCACTGGCAGTTCGGCTTCTTCAGGATGGGACTTTGTTGAAACTCTTCCTCTTTCTGCTGAAGAAGGTTGTGTAAAACTTCCTTCTCTACCTGAGGGAGAAATCACTACTATTGAGGTTCACCGTACAAACCCCTACTCGGAGATGGGCATAAGTATTGTGGGTGGAAATGAGACTCCCCTGATAAATGTGGTAATACAGGAGGTGTACCGTGACGGTGTTATAGCCCGAGACGGAAGGCTGCTGGCCGGAGACCAAATACTTCAGGTGAACAATGTAGACATCAGTAACGTGCCCCATAACTTTGCTCGCTCTACACTGGCCCGTCCCTGTGCTACCCTTCAGCTGACGGTTTTAAGAGAGCGCCGCTGCTCTGCCAGGCCACCTGCAGCAACTGCATCACCCAAGGGCAGCCCTGCCAGCATACGCATCACCCTGCACAAGAGGGAATCATCAGAGCAGCTGGGCATCAAGCTTGTGCGGCGTACAGATGAAGCCGGCGTTTTTATTCTGGATCTGCTGGAGGGAGGCTTAGCTGCGAAAGATGGGCGACTCTGCAGCAACGACAGGGTGCTGGCTGTCAATGAGCATGACCTGAGACATGGCACGCCAGAGCTGGCAGCTCAGATTATACAGGCTAGCGGAGAAAGAGTCAATCTGCTGATTAGCCGGTCCAGCAAGCAGACTATGGCGGTGCACACAGGCTCCACCTTGACCAGGGACATTTGGAGCCATGATCACATCCCGCCACTTCCCAGTACTGCGACCCCAAGTCCCGTCCCCAGTCTGCACCTTGCCAGGTCTTCCACCCAGAGAGATCTCTCCCAGTGTGTGAACTGTAAAGAGAAACACATCACTGTGAAGAAGGAGCCTCATGAGTCTCTGGGAATGACTGTGGCAGGAGGACGGGGCAGCAAAAGTGGGGAACTGCCCATATTTGTGACGAGCGTCCAGCCCCATGGCTGCCTGTCACGTGACGGACGAATCAAACGTGGGGATGTACTGTTAAGTATTAACGGTCAGGATTTGACCTACCTGAGCCACAGCGAAGCAGTTGGCACCCTGAAGTCCAGCGCCACGTCCTGCTCTGTTCAGCTGAAAGCACTAGAAGTCACCATGGTGGAAGAGCCAGGCCTGGACGAAGAGCTTCTCCCTCCACACGAAAATGACTACGATGCAAGCTGGTCGCCATCATGGGTCTTGTGGCTTGGGCTTCCCAGCTACCTGCATAGCAGTCATGAGATCGTCCTCCGCAGGAGTCACCCTGGCAGCTGGGGCTTCAGCATTGTTGGAGGTTATGAGGAGAACCACAGCAACCAGGCATTCTTTATCAAGACTATCGTCCTTGGAACTCCCGCATACTACGATGGTCGTCTAAAGTGTGGTGACATGATAGTTGCTGTAAACGGTCTGTCCACAGCTGGCATGAGTCATTCCGCGCTTGTGCCCATGCTTAAGGAGCAGCGGAGCAGGGTGGCGCTTACGGTTGTGTCCTGGCCAGGAAGTCTGATCTAACTCAACCAGGACACCATGCCACACCCCAGACAACACTCATATCTGTGTCTTCTAATGGTCCTATGTGTTCTACTCTCTGCCACGGAGGCACCATACTGTCAAAGCCAGAGTctcgaaaaaaaaacaacaacaacgaatgCTTTTACTTGATGCTGAACAAACCAGGCCTTAGAAAACCTGCCACGCCCATGAGGCTTTTCCCCCTCTGGAGAGCAGCCTTAAGGTCTCCCCTCACCATGCCGATCAGCAGTCCACTCTACCGGAGGTTTTATATTCATGTTATCTCTAAATGTGATCTACGTTTGTGAATGTTTGTGAAAAAGAGAGACAGAACAAACAGTGTATGTATGCGTGCAagtatgaatggatgaatgtgcacagctgtttaataaatctttcCCAGTGAGGACACC

Function

GO:

id name namespace
GO:0031017 exocrine pancreas development biological_process
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060228-2 Enables ubiquitin protein ligase activity. Acts upstream of or within exocrine pancreas development and protein phosphopantetheinylation. Is expressed in central nervous system; endoderm; and pancreatic system. Orthologous to human LNX2 (ligand of numb-protein X 2).

Ensembl:

ensembl_id ENSDART00000046211

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046337 lncRNA downstream 26061 21611602 ~ 21620256 (-) True XLOC_023424
TCONS_00046855 lncRNA downstream 276563 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046322 lncRNA downstream 276737 21368211 ~ 21369580 (-) True XLOC_023421
TCONS_00047176 lncRNA downstream 415146 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00046320 lncRNA downstream 415146 21228869 ~ 21231171 (-) True XLOC_023420
TCONS_00047177 lncRNA upstream 378813 22053809 ~ 22066831 (-) True XLOC_023442
TCONS_00046366 lncRNA upstream 396225 22071221 ~ 22074272 (-) False XLOC_023443
TCONS_00046367 lncRNA upstream 396225 22071221 ~ 22077479 (-) False XLOC_023443
TCONS_00046370 lncRNA upstream 448890 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00046373 lncRNA upstream 1015987 22690983 ~ 22701598 (-) False XLOC_023444
TCONS_00046336 mRNA downstream 9134 21603588 ~ 21637183 (-) True XLOC_023425
TCONS_00046335 mRNA downstream 26001 21600320 ~ 21620316 (-) False XLOC_023424
TCONS_00046333 mRNA downstream 57403 21584074 ~ 21588914 (-) False XLOC_023423
TCONS_00046334 mRNA downstream 58982 21586310 ~ 21587335 (-) True XLOC_023423
TCONS_00046329 mRNA downstream 133892 21372393 ~ 21512425 (-) False XLOC_023422
TCONS_00046340 mRNA upstream 12280 21687276 ~ 21689146 (-) True XLOC_023427
TCONS_00046341 mRNA upstream 16943 21691939 ~ 21713883 (-) True XLOC_023428
TCONS_00046342 mRNA upstream 75814 21750810 ~ 21808816 (-) False XLOC_023429
TCONS_00046343 mRNA upstream 105552 21780548 ~ 21808819 (-) True XLOC_023429
TCONS_00046344 mRNA upstream 138131 21813127 ~ 21819010 (-) True XLOC_023430
TCONS_00046316 other downstream 502017 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 987649 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046286 other downstream 1114731 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 1175227 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 1458887 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046357 other upstream 288056 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 289054 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 396225 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 633948 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 696990 22371986 ~ 22372100 (-) True XLOC_023446

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_04627321_04645724.mRNA True 2926 mRNA 0.54 11 CI01000018 4627169 ~ 4646182 (-)