RNA id: TCONS_00046341


Basic Information

Item Value
RNA id TCONS_00046341
length 3849
RNA type mRNA
GC content 0.41
exon number 24
gene id XLOC_023428
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21691939 ~ 21713883 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTCACGGTCTGACAAGAGTCGGGGAACAAACTGTTATGTATTCACGCAATGCATCTTGGAATCAAGCTCTTGCTGGTGCTGCTCGTGCTGCACTGGAGCTCGTTGAAGGACGGTTTAACTGAAGCTCATCCGCGATGCGACACTGATGGATCGACTGTAAGATGCACGCTGGAAGAGACTGACTTAATGAGTTCTGACCCAATCAAACTGGATGTCACTGAAGGACAAGTGGTGGAAATTTACAGTGCATGTGAACAAAATAGCTCCAATGAGCGTAAATGTCTCTGCTATCAAAGGACAAATTCTTCTATCCATCTGTTACAATGCATTGAAAAATTGGGAAATGAAAAATATTCTGTGATCTGTGGCAATAAAACTGTTACGGCTGTTCGGGCAACACAAAGAAGGCCATCGGTTCCAGTTCTCAAAGCTATTTTAAAGGCAGGGTCTACAAATCTAGCTCAGTTAGTGTGCACTTCTGAGGGGTACCCAAAACCAACTCTCAGGTGGTATGGGAACAGtgATGATGCAGAGGAGGGCATGACAAGTAGTGCGTGTAAGACAGAGAGCACTTTGATAAGTTATTATAGTTATCTTTCTAAAAATCCAAATCAGAAATGCTGTGCCAGTAATGCTCTGGGAGAAGAATGCACTGAGGTCTATCATTATGATCTGAATGAGGAGGATAAGCAAAAGtctcaaaatataatttatcTTAAATCTGGTCAATCTTTGCTGCTCAGAGCTGCCAAAAAAGATTTGAGAAACCCAGGAATAAAATGGCACTTTAATAACACAGTGATCAAGGGAATCACCTCATTACAATATTATGACTGGACAGAGCACCTCTTTATCGAATCAGTTAATATGGCACACAGTGGGCTTTACCTCTGCACATCAGATACTAAAACCCCCCGAAATTGCAGCACCCATGTCAAGGTCTTTGAACATGATCAAATTGACATATTGCATCTGAACGAGAACAACAGCATACTAGCAAAAAATAAGACAGACTTTTGCTTCCAGTCTCAGGTTTTCTCCTACCCAAAAGCCCGGTGTTATTGGATCACACcaaatcaaacacaaatacagTGTGACGAAACTTCCCAATCAAATTTTACCAGTACGTTTAAGCTGTGTAACACTGAACCAGGTCAGTATCAAATGAAACTCGAGACTCAGGAATACAGTGTCATGAGGAATGTATCTCTGTGTATCTCAGATATTCCTAAAATTACAATACGCAAAAATTCAAGCTTCACTACTTGTGAGACTGAAAGCCCTTTACCTGTGACTGTATCCTGGAAGACCTGCCCATCCCATGCTAAATGTGATCCTGAAGACTGGAAAGAGATAGCTGCTGACCAGCCAGAGTTTACAGATTCAGATCAGTTCTGTCAGAAGAAAATTGGCTTTTCCAGACGGCACCTGAAAAGCGAGGACCATCTTATCAAATGCTGCATCACTAATGTTGCAGGGACTGGCTGCAGTGAAAAAATACTACTGCAAACCAAGTCTCACACTTATTATGTGATCTGTTTCCTGCTCATCGTTATACTCTTCATGATTATCATTGCATTAATCATCTTCATCAGAGTTAAGAAACCTAAGTACCAGAGTCAGATCCAGATGATTCAGATGATCGGACCCAACGACAATGATTACATTTATATTGACTTCAGAGAGTTCAAATATGACTTGAAATGGGAATTTCCTCGCGAAAATCTCGAACTTGGGAATGAACTTGGATCTGGTGCTTTTGGGATGGTTGTTCAGGCTACAGCATATGGGATCAGCAAGCCGGGTGTTTCTGTTCAGGTAGCGGTAAAAATGTTAAAGGAGAAGCACCAGGCAGTGGAGAAGGAAGCTCTGATGTCTGAACTGAAAATGCTGACTCATATTGGACACCATGAGAACATTGTCAACCTGCTTGGTGCTTGCACGGGATCAGGTCCTGTTTACCTGATCTTCCAGTACTGCTGTAACGGAGATCTCCTGAATTACCTGAAGAGCAACAGAGAATGCTTTCACAAATATCTGACGGACGCTTTCAACAAGGACAGATTCAGGGGCCTCTACCACAACTTCCAGCAGAACAGAAACTCCAGTGAGTATGTTCTGTCTGATAACAGCCAATGCCTAAATGTGACTCCTGCTAGCAAAGAACAGGAGAAAGAAAACGATGCGCTTCTGAGTAGCAGCATCAGCTCAGGGTCTCCTGCTGAGGAAATGCTTGAGTGTGAAGACGAGCATCAAGAAGAGGAACTTCACAGTCTCACCTATGATGACCTTCTGAGTTTCTCTTTTCAAGTTGCAAAGGGCATGCAGTTCCTGTCTGCTAAAAATTGCATCCACAGGGACTTGGCAGCCAGAAATGTTTTGGTGACACACGGCAGACAGGTGAAAATCGCTGACTTTGGTCTTGCCAGAGACATTGAGCATGACTCCAACTACGTTGTAAGAGGAAATGTGCGTTTGCCGGTGAAATGGATGGCACCTGAGAGTATTTTTAAAGGCATCTACACAATGGAGAGTGACATCTGGGCCTATGGCATTCTGCTCTGGGAGATCTTTTCTCTAGGAGTCACCCCATATCCTGGTGTGACTGTGAACAACACTTTCTACAGAATGATTGAAAGTGGATATCACTTGGAGCAGCCCTATTATGCAGCAGAATCTGTGTACAAGGTTATGTGTCGCTGCTGGGCGTTGAATCCTGTAGATCGGCCTTGTTTCTCCAAAATTGTGGCTTTCATGGAAAAAGAGCTGGCAGCTTTAGAAGAGAGGCTGTATTACAATGTCGGAGGATACAGTCACGATGAAATAACATACCAGAATGCACCAGTGATGCCTGAAGATACACCGATAGTCACGGATACACATGGTTCTGGAGCAGTAAGAACAGAACCTCCTGTTTGAGGCTGAGTTTAAGTCTCAatcattaatgcattaattattaatgtatgaaatgtattttgGCAGGGAAACATATTGAAGGGAAAATTTGCTGCTTACTCGTTCTTGGCGATTCATAAAATGCATCTCAATGGCTACCAGTAGACATATGTTGTGACCTTAAAATCATACTCAGGTTAAACTAATGCTTTGGTTACACAGAATTCAGAATCACAAGCCTTTGCAGTCGAAAAGTGAAATCAActgtacccagcaggcacacaaagtCATTAGATGTTTAAATTAGGTTAGATTTACTTTTGTGACGTTAGATGActaaaatttaatgtctagcgtGTGTCTAAGGACATTGAAATTTGGTCTATTTAAGGTTGTGACCAAAATCCAGCGTCAAGCCATCATCATCTTGTATGTTATATTGAGGTCAAATACTGAATTTTTtaatcaggtatggcaaccaaaatctgatGTCTGTTCAACGTCAAAGTAGTAATGTCCACaacacatcaagctgtaacattagatgttgatattaggttgattttaggttggacgatGGACATTAATGTCGGTcaggttctgacatcaaccccgATTTTCGTCTCCAAACAAAATATAATGTCCCCCCAACGttagggtacaacatcaatatgacgtcctgtgcctgcagggtatcATTACCAGGGGTGGGGGCAAGTTGGAGCCCTCATTCTGGCCCCCCGGGTTCTGCGCTAgttggggaaattccaaattgaaccaaaaacaaactattacaaatggcttaagattggcaatcaAAATTTGTGACATTGCAATCtgggggatttttttttatattattaaaaaaaataaaactcatcaTTACTCTTTTTCAGGAAAGCCattctaatttatttttgtttaataatatttctttctctttttattttgt

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0030098 lymphocyte differentiation biological_process
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0002521 leukocyte differentiation biological_process
GO:0033674 positive regulation of kinase activity biological_process
GO:0030154 cell differentiation biological_process
GO:0030183 B cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0030225 macrophage differentiation biological_process
GO:0061515 myeloid cell development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0019838 growth factor binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko04014 Ras signaling pathway
ko04151 PI3K-Akt signaling pathway
ko04640 Hematopoietic cell lineage
ko05200 Pathways in cancer
ko05202 Transcriptional misregulation in cancer
ko05230 Central carbon metabolism in cancer
ko05221 Acute myeloid leukemia
ko01001 Protein kinases
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-050114-4 Predicted to enable growth factor binding activity and transmembrane receptor protein tyrosine kinase activity. Acts upstream of or within macrophage differentiation and myeloid cell development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including ball; digestive system; hematopoietic system; kidney; and pericardial region. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; acute myeloid leukemia; colorectal cancer; hepatocellular carcinoma; and prostate cancer. Orthologous to human FLT3 (fms related receptor tyrosine kinase 3).

Ensembl:

ensembl_id ENSDART00000081357

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046337 lncRNA downstream 71683 21611602 ~ 21620256 (-) True XLOC_023424
TCONS_00046855 lncRNA downstream 322185 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046322 lncRNA downstream 322359 21368211 ~ 21369580 (-) True XLOC_023421
TCONS_00047176 lncRNA downstream 460768 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00047177 lncRNA upstream 339926 22053809 ~ 22066831 (-) True XLOC_023442
TCONS_00046366 lncRNA upstream 357338 22071221 ~ 22074272 (-) False XLOC_023443
TCONS_00046367 lncRNA upstream 357338 22071221 ~ 22077479 (-) False XLOC_023443
TCONS_00046370 lncRNA upstream 410003 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00046373 lncRNA upstream 977100 22690983 ~ 22701598 (-) False XLOC_023444
TCONS_00046340 mRNA downstream 2793 21687276 ~ 21689146 (-) True XLOC_023427
TCONS_00046338 mRNA downstream 16943 21646317 ~ 21674996 (-) False XLOC_023426
TCONS_00046339 mRNA downstream 16989 21646319 ~ 21674950 (-) True XLOC_023426
TCONS_00046336 mRNA downstream 54756 21603588 ~ 21637183 (-) True XLOC_023425
TCONS_00046335 mRNA downstream 71623 21600320 ~ 21620316 (-) False XLOC_023424
TCONS_00046342 mRNA upstream 36927 21750810 ~ 21808816 (-) False XLOC_023429
TCONS_00046343 mRNA upstream 66665 21780548 ~ 21808819 (-) True XLOC_023429
TCONS_00046344 mRNA upstream 99244 21813127 ~ 21819010 (-) True XLOC_023430
TCONS_00046345 mRNA upstream 127355 21841238 ~ 21847945 (-) True XLOC_023431
TCONS_00046346 mRNA upstream 150052 21863935 ~ 21903588 (-) False XLOC_023432
TCONS_00046316 other downstream 547639 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 1033271 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046286 other downstream 1160353 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 1220849 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 1504509 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046357 other upstream 249169 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 250167 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 357338 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 595061 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 658103 22371986 ~ 22372100 (-) True XLOC_023446

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_04657706_04674073.mRNA True 3508 mRNA 0.43 24 CI01000018 4657571 ~ 4674073 (-)