Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00046342 |
| length | 4251 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 30 |
| gene id | XLOC_023429 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007135.7 |
| NCBI id | CM002908.2 |
| chromosome length | 42172926 |
| location | 21750810 ~ 21808819 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0002244 | hematopoietic progenitor cell differentiation | biological_process |
| GO:0045446 | endothelial cell differentiation | biological_process |
| GO:0033674 | positive regulation of kinase activity | biological_process |
| GO:0045766 | positive regulation of angiogenesis | biological_process |
| GO:0002040 | sprouting angiogenesis | biological_process |
| GO:0016477 | cell migration | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0001525 | angiogenesis | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0001568 | blood vessel development | biological_process |
| GO:0001570 | vasculogenesis | biological_process |
| GO:0048010 | vascular endothelial growth factor receptor signaling pathway | biological_process |
| GO:0008016 | regulation of heart contraction | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0060841 | venous blood vessel development | biological_process |
| GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway | biological_process |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0043235 | receptor complex | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| GO:0004713 | protein tyrosine kinase activity | molecular_function |
| GO:0004714 | transmembrane receptor protein tyrosine kinase activity | molecular_function |
| GO:0005021 | vascular endothelial growth factor-activated receptor activity | molecular_function |
| id | description |
|---|---|
| ko04010 | MAPK signaling pathway |
| ko04014 | Ras signaling pathway |
| ko04015 | Rap1 signaling pathway |
| ko04066 | HIF-1 signaling pathway |
| ko04020 | Calcium signaling pathway |
| ko04151 | PI3K-Akt signaling pathway |
| ko04510 | Focal adhesion |
| ko05202 | Transcriptional misregulation in cancer |
| ko05323 | Rheumatoid arthritis |
| ko01001 | Protein kinases |
| id | description |
|---|---|
| ZDB-GENE-050407-1 | Predicted to enable transmembrane receptor protein tyrosine kinase activity. Acts upstream of or within blood vessel development; establishment of left/right asymmetry; and regulation of heart contraction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in angioblastic mesenchymal cell; brain; cardiovascular system; endothelial cell; and somite. Human ortholog(s) of this gene implicated in Kuhnt-Junius degeneration; diabetic retinopathy; and pre-eclampsia. Orthologous to human FLT1 (fms related receptor tyrosine kinase 1). |
| ensembl_id | ENSDART00000025621 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00046337 | lncRNA | downstream | 130554 | 21611602 ~ 21620256 (-) | True | XLOC_023424 |
| TCONS_00046855 | lncRNA | downstream | 381056 | 21331016 ~ 21369754 (-) | False | XLOC_023421 |
| TCONS_00046322 | lncRNA | downstream | 381230 | 21368211 ~ 21369580 (-) | True | XLOC_023421 |
| TCONS_00047176 | lncRNA | downstream | 519639 | 21226533 ~ 21231171 (-) | False | XLOC_023420 |
| TCONS_00047177 | lncRNA | upstream | 244993 | 22053809 ~ 22066831 (-) | True | XLOC_023442 |
| TCONS_00046366 | lncRNA | upstream | 262405 | 22071221 ~ 22074272 (-) | False | XLOC_023443 |
| TCONS_00046367 | lncRNA | upstream | 262405 | 22071221 ~ 22077479 (-) | False | XLOC_023443 |
| TCONS_00046370 | lncRNA | upstream | 315070 | 22123886 ~ 22149868 (-) | False | XLOC_023444 |
| TCONS_00046373 | lncRNA | upstream | 882167 | 22690983 ~ 22701598 (-) | False | XLOC_023444 |
| TCONS_00046341 | mRNA | downstream | 36927 | 21691939 ~ 21713883 (-) | True | XLOC_023428 |
| TCONS_00046340 | mRNA | downstream | 61664 | 21687276 ~ 21689146 (-) | True | XLOC_023427 |
| TCONS_00046338 | mRNA | downstream | 75814 | 21646317 ~ 21674996 (-) | False | XLOC_023426 |
| TCONS_00046339 | mRNA | downstream | 75860 | 21646319 ~ 21674950 (-) | True | XLOC_023426 |
| TCONS_00046336 | mRNA | downstream | 113627 | 21603588 ~ 21637183 (-) | True | XLOC_023425 |
| TCONS_00046344 | mRNA | upstream | 4311 | 21813127 ~ 21819010 (-) | True | XLOC_023430 |
| TCONS_00046345 | mRNA | upstream | 32422 | 21841238 ~ 21847945 (-) | True | XLOC_023431 |
| TCONS_00046346 | mRNA | upstream | 55119 | 21863935 ~ 21903588 (-) | False | XLOC_023432 |
| TCONS_00046347 | mRNA | upstream | 55902 | 21864718 ~ 21903360 (-) | True | XLOC_023432 |
| TCONS_00046348 | mRNA | upstream | 96901 | 21905717 ~ 21914276 (-) | False | XLOC_023433 |
| TCONS_00046316 | other | downstream | 606510 | 21139322 ~ 21144300 (-) | True | XLOC_023418 |
| TCONS_00046297 | other | downstream | 1092142 | 20647475 ~ 20658668 (-) | False | XLOC_023409 |
| TCONS_00046286 | other | downstream | 1219224 | 20450027 ~ 20531586 (-) | False | XLOC_023407 |
| TCONS_00046292 | other | downstream | 1279720 | 20470954 ~ 20471090 (-) | True | XLOC_023407 |
| TCONS_00046277 | other | downstream | 1563380 | 20187316 ~ 20187430 (-) | True | XLOC_023401 |
| TCONS_00046357 | other | upstream | 154236 | 21963052 ~ 21963168 (-) | True | XLOC_023437 |
| TCONS_00046358 | other | upstream | 155234 | 21964050 ~ 21968116 (-) | False | XLOC_023436 |
| TCONS_00046365 | other | upstream | 262405 | 22071221 ~ 22097763 (-) | True | XLOC_023443 |
| TCONS_00046371 | other | upstream | 500128 | 22308944 ~ 22309058 (-) | True | XLOC_023445 |
| TCONS_00046372 | other | upstream | 563170 | 22371986 ~ 22372100 (-) | True | XLOC_023446 |
