RNA id: TCONS_00046346


Basic Information

Item Value
RNA id TCONS_00046346
length 5572
RNA type mRNA
GC content 0.47
exon number 13
gene id XLOC_023432
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21863935 ~ 21903588 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAACATCAAACAAATGATATCACAGTCGTGGTGCTGGTGGTTTTGGCAGGCGTCCCGTGCGCAGACTATGAACCGCGTATCACAGCCGACCTTTTTTCTCCGCCCCGCAGCAATCAGCGCAACAAGTGCACTGATGCTGGCCAATACCGTCGCGACGCTGCCTGCAGTCATGGCTCTCTGGCTGAGCCCTTCCACCGAACCTATCCAAACTTTTTAACCGATACGGGTTGACCCTCGAAATCAGGTTGATTTATTTCGTTAAATTACATAGCCTGAAGGAGTTGGCGAGCCACGGACAGTCGCACTTTTTTACGGAAAGTTTTCTGCTTCTGCTAACGTTAGTTGTGTGACTACGGAGTGTTTGTTCACGCACGAGACGAAATATTGGCGTCTGTCTGCTCATCGTGTACTTTAAGATTCACCATTGGTTTGTATAACGATTTCCGCTAGGTTACTATGCGTAATTTGTCGGACATTGGACTGTCGGAGGAGTTAGTCGGGTCGATCGAAGCCGAGCAACTATTGTGACACCGGGCCAAGACACCGCTCAAGAAGTATGATAAAGGCAACTTCGTCAGACCTGCAGGGTTCCTCTCATAGCAATGACCCACAAAGTGACCCTTTCACTGAGGACCAACTGATGAATCCAAGTCTGAGGTCTGGTTGTAGAGTCCAGGTGCAACCGGTTTTATCCGAGCCTTGCTATGAAGAAAACCGGCTAAACCGACTAAAATCTCATGCCCAGTCTGTTCCTGTGATTGCCGATGGCCAGGCCAAGCTATACCCATCCAGGACAGTTCGTCTGTTTCCCACACAGGCAAAATCTGAGGATGGTGCTTCACAAAGAGGTCCACCTGTCACACCACAGGCTTGGTCTGGATTGGCTGGCTTTCGTGTCATGGGTTCTTTTAAAAAACTGCGGACTTCAGTTCTCCAAGGAATTCAGAACAGGAGCAATGCCATGGGAGCCAGTCAGGAGAGAAACTTATCCTCGGTGATTGAAGATAGTAGTAGTTTTTTGGTAACCAAACGAGAGATTTCCATCAGTCAAACCCACGAAACTGAAAAAGTGTTAAATGGGACATCTCGAACCAGAAAGACATCTTCGGTTTCAGATGAGGATGATTGTGAGGAGGTGTGTGGGTTTCAGAGGAATTCACACTTTTCTCAGAGTATCCGCAAGGCTTATGGGGCAGGACGGATATCAATGCTTGACATGGTCAACAAACAGAGCCTGTCTACTGCTGAGCCAGACCCCGTCAACACTGTGGAATCCACAGAACCTTGCAATAACCAAGACACTCAAGGAAATGTCAAGGTTCTCAAAAGACTAAGCAAAAGCGCAGATAATCTCCACGTTTTTAAGACTCATTTTAGACGCAAAGTTGCCACAGCTGAGCCACAAAACCCAGAATGTTCCAGCACTGTAATGCTTCAGAGGACCTCCAGCTCCTCATCGGTTGACTTGCAGGAACATGTTTTAGGTAGCCATCAAAGCCCCATGAGAACACGAGGACATTTGCAAAAGCTTGTCGGTAGTTTAACTGACCTCACAGTCAAGCGCAAAAACATTGCAAGCCCTTCTCCAAGAGTGCCAGTGTCACCCCTTAGTCAGCTACATGACGACTACTCGCGCAGAACTCCTTGTGTCCCCACTAGCGGGCGCCAACGTAGGCCTTCGCCTGTACCCACCAAAACCCAGCAGGACAGTACTTGCCAAACCATTCCAATTTTACACCCTGCTCCCTCTTGTCCTGCAGTCTTTATCTCTGACCTGGATGACTCTCTGGAGCCTCCTAGCAAAACCACAGCCCTTATAAGTGACTATGTACAGATGGCCGTGTCCTCATCTGAGCTGCATATTGGTGACTCGGCTTGTCCACCGGAAAAATACTGTGAACCTATGGAGTGCcatcaaaatggattaaatgatCACTACTCTCAAATTCCCCAGCAGTGCTCAAGCCCTTGTCTGAAGCCAACAGTCAATGGCAATGATGTTAACTTGCAGTGTTTATGGACTGAAGAGAGAGAAACTGATGATCTTGagGCTTCATCAGATAACCGCATCACCAGAGCGTTTCTTAAAAGTGATGAGGCCTCGACCCCTGCTGCTTCACCCATCACAAACAGCTGCTGCTCAGAATCTCCATTGGGAACTCCAACAACACCAAACTCTCCAGCTTTTGTCAGTGCCTCCCCCACCTCTGTAGTGCCCAGGAAGAGAGCAGGTCGCTCCAAACCCCGTCCAGTGTCCGACTATGGCCAGTTGGCCAGCTCAAAGTTCTGCATCCTCGAGGAGGACAGGGAGTTGGAGAATATGGACTATACTTCCCAAAAGGACTACATTAGCAATGGCAGCTACATAGAGAGCAGCAGACCTGAGAACGGTCATGTGTGCACTCAGAAAGAAAGCAGAAAAAGACGTCCAATCTCCGTTATTGGAGGAGTGGATCTGTATTCATCTCAACCTGCCGAGCAGAAGGATGACACTGAGAGTTTGCCCTCTCCGGTTTGTCGTCCTCCAGTGCCCTCTCACAGGGTGCCTCCATACCGAGCAGTTTCTGCCCGTCTGAGACCCTGCGTCTTCTCCCAAAGCACACCGATTGGCCTGGATCGGATGGGGCGTCGCAAAGGGCGCAGAGTGCTCAGTGacGGCAGCTCTGATCCAATGCTTGAGGACAGTGTGAGTGAGGAGGATGGCAGCTTTGAAGAACTGACTGAAGGAACACCATATCTTCAACCAGAAGTCGATCTTTTTACTCTCAATCAGCACATAGAGTCGGGTCGGGCCGTGTATGCAGAGGCTCTGTGGGACCATGTCACAATGGAGGAGCAGGAGCTGGCCTTTAAAGCCGGGGAGGTGATCCGAGTTCTGGATGTTCAGGAGCAGGACTGGTGGTGGGGGATGGTGGGCGATCGGGAGGCTTGGTTTCCCTCTAGCTTTGTGCGGGTTCGGGTGAATCAAGAGGATTCGAGCAGTGAGAGTGTAGAAAGCACGCCAGATACAGAGGAGCCCATCCCATCAGACTCGCACAAACAAAACCCTGAGCACCGAAAGCAGATGAGAGCCAATGTGGTCAAAGAGATTATGGACACGGAGCGAGTTTACATCAAACATCTCAAAGATATCTGTGAGGGATATATTCGTCAATGTAGAAAGCACCCTGGCATGTTCACAGACACACAGCTAAAGACAATCTTCAGCAACATCGAGGACATCTACAGGTTCCAGAGGAAGTTTCTGAAGGATTTGGAAAGGAAATACAACCCTGAAAATCCTCATCTAAGTGAGATAGGCTCCTGCTTCCTTCAACAGGTACCACTGGATTCACAAGAACAATGGAAATTAATGTTTTCCTCACAAATTGCTGATATCccatgtttttctctctctcaggaGGAAGGTTTCTCCATATACTCTGAGTACTGTAACACACATCCAGTAGCGTGTGCTGAACTGCAGCGACTGATGAAACAGAGCCGATATAAACACTTCTTTGAAGCCTGTCGTCTCCTGCAGCAGATGATTGACATTTCCATTGCTGGATTCTTGCTCACACCAGTGCAGAAGATTTGTAAATACCCTCTTCAGCTAGGAGAGCTTTTGAAATACACACCCAAAGAACACAGTGACTTTGCAGGGGTGTGTGCGGCACATAAAGCGATGAAGAATGTGGCAAGTCTGATAAATGAGAGGAAAAGGCGTCTTGAGAGCATTGACACCATCGCTCACTGGCAGGTGGCCATCCTGCACTGGGCGGGTGAGGATGTGTTAGCAAGAAGCTCAGAGCTCATCCACTCTGGCGAGTTAACTCGGATAGTACGGCCTGGAAAAACCCAGCAGCGCAGCTACTTTCTGTTTGACCATCAGCTGGTGTTCTGTAAGAAAGACGTCCTGCgcagagacctgctgcactacCGCGGCCGTATGGACACAGATCTGCTGGAGCCGAGTGACCTGCCTGATGGACGGCACACAGAGCTGGGCCTGCTGAAGAACGCCTTTCTCCTGCGCCATGCGGAGAACCTGAACGTGCTGTGTGTGCTGTGCTGCAAGAAGAGCCAGGATAAGCAGCGATGGCTACAGGCTTTTGCCCGGGAGCGTAAACGTGTACAGGAAGACCAAGAGATGGGGATGGAGATTACTGAAGCCCAGAGGAAGCAAGCAGTTCATAATGCCAGGAAATCTAAACACGGCAAAATGAAAAATATGAATTATTCTGGCCATCCTGCGCCTCCCCACCATCAGCCTCTTCATCCTCTTCATCAGAGACATGTGACTGTGCCAACCAGCGTCCCTCAGCAGCAGGTCTTTACTTTAGCAGAGCCCAAAAAGAAGCCTTCACACCTGCTGTATTCTCTCGCCCGCAGTGCCCTCTTCAGGAAATGACAAGAAGATCCAAAATAATGCAATGTCACTGGACTACACATCTGTATTATGTCAAACTCGTGCATACACAcgatatgtatatatttatatacatacacgtagatgtgtgtgtgaatgacataTGTGCCTCAGTATAAAGGCTCATTATTTAGCCTTAAGTTAGTGTGGAAAGTGTTAGTTATCTTTTTgttgtgtcattttatttgtttgttgaagAAGCTGCTTCTTATCCGTGATGTGCAACAAATGTGTGTGTCTTTTATGACAAAGAGTTGTATTCAGCTTTTTAGCAACATGATGTCTATAATTTTATTGCTTTACATGAGGCTGGAGCCTCAATAAAACACTAACATCTATCATGTCATTGTAAATAAACTTGAACCAAATGTACACTTTTTGTGCCTGCAAgtgtttaaatacataaaatgtgaAGTTTTTAAGTGTGttacaatattttgtattgtTCAAAGAGAATGGGTGTATGTATAGGATATAAGTGAACACAAGGCTCACTGTCTGCACTGCCATGGATACAGTTACACTCTGTCAGGTGGAAACGGAGAGCCTCGTGTCGTTTACCTTTATTTCGCTGCTCACCTTCACGTCGGGCTCTCAGGCAGGTATTTTCTGTGGAAACCGGTTGGTAGTATGCCGGTTTGGACGTGATAAACGATCCAAATGAATGACTGTAAGCCATGGAAACAGCGAGAGAAGAAGGCGGACAGGGCGGCGAAGAAGAGGAGGCCAAAGAAGACGCCAGAAGTGTGAGTAAGAATGCTGAAACAAATGCTGATAGATTCCTTACGACGTTATGCGTGTATTTCAGTGAAGATATTTTTACTCTCACTTAATGACCCTTGTGGTGGCCaaagtgatttattaataacCACAATAGTATAGTAACTGTAAAGCCGCAGTGTAATTTCTGTGATGGGTAAAACTTTTGACCTCTGTTGATAATACGAAGTCACTAACGTTATATGATTGGCTTTAACTTTCTACATTTTCCAAAAAGTAACTGCTGTCCTGGAAGATAGGGGTTGTCTGTAAAGTGTTTTCCAAATGACACAAATATAGATTTGTCATCAACAGTGTACGCAAGTAATTTTCAAAAAGAGTGGAAATATGgagtgaaatatgtaaaaaaaaatatataataataatagaaaaaacatTTCT

Function

GO:

id name namespace
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091116-25 Predicted to enable guanyl-nucleotide exchange factor activity. Orthologous to human SPATA13 (spermatogenesis associated 13).

Ensembl:

ensembl_id ENSDART00000180991

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046337 lncRNA downstream 243679 21611602 ~ 21620256 (-) True XLOC_023424
TCONS_00046855 lncRNA downstream 494181 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046322 lncRNA downstream 494355 21368211 ~ 21369580 (-) True XLOC_023421
TCONS_00047176 lncRNA downstream 632764 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00047177 lncRNA upstream 150221 22053809 ~ 22066831 (-) True XLOC_023442
TCONS_00046366 lncRNA upstream 167633 22071221 ~ 22074272 (-) False XLOC_023443
TCONS_00046367 lncRNA upstream 167633 22071221 ~ 22077479 (-) False XLOC_023443
TCONS_00046370 lncRNA upstream 220298 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00046373 lncRNA upstream 787395 22690983 ~ 22701598 (-) False XLOC_023444
TCONS_00046345 mRNA downstream 15990 21841238 ~ 21847945 (-) True XLOC_023431
TCONS_00046344 mRNA downstream 44925 21813127 ~ 21819010 (-) True XLOC_023430
TCONS_00046343 mRNA downstream 55116 21780548 ~ 21808819 (-) True XLOC_023429
TCONS_00046342 mRNA downstream 55119 21750810 ~ 21808816 (-) False XLOC_023429
TCONS_00046341 mRNA downstream 150052 21691939 ~ 21713883 (-) True XLOC_023428
TCONS_00046348 mRNA upstream 2129 21905717 ~ 21914276 (-) False XLOC_023433
TCONS_00046349 mRNA upstream 3194 21906782 ~ 21913426 (-) True XLOC_023433
TCONS_00046350 mRNA upstream 13424 21917012 ~ 21921262 (-) False XLOC_023434
TCONS_00046351 mRNA upstream 13424 21917012 ~ 21921289 (-) False XLOC_023434
TCONS_00046352 mRNA upstream 13623 21917211 ~ 21923930 (-) False XLOC_023434
TCONS_00046316 other downstream 719635 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 1205267 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046286 other downstream 1332349 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 1392845 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 1676505 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046357 other upstream 59464 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 60462 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 167633 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 405356 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 468398 22371986 ~ 22372100 (-) True XLOC_023446

Expression Profile

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