RNA id: TCONS_00046350


Basic Information

Item Value
RNA id TCONS_00046350
length 1714
RNA type mRNA
GC content 0.39
exon number 3
gene id XLOC_023434
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21917012 ~ 21934571 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCAAACCGAGGCCCTAGTTATGGACTGAGTCGTGAGGTGCAGGAGAAGATTGAGCAGAAATATGACCCTGAGCTGGAGTCTCGACTGGAGGACTGGATTGTTGCTCAGTGTGGAGGAAACGTGGAAAAACCACAACCAGGAAAACAAAACTTTCAAAACTGGTTAATGGATGGCACTGTGAGTAAAACCCCGATCAGTGTAGAACATCAACACGACTGTGTTCATCTTTCATTTATCTCTGTCTCCCCGTTCCTTAATTCTCAGATCCTCTGTAGACTCATCAACAGTTTGTATCCACGAGGTAAGGAGCCTATAAAGAAGATCTCAGAGACTCAGATGGCATTTAAGCAGATGGAAAAGATCTCGCAGTTCCTTCAGGCAGCTGAAGCTTATGGAGTAATAACCACAGACATTTTTCAGACAGTGGACTTGTGGGAAGGAAAAGACATGGCAGCCGTCCAGAGAACGCTAATGGCGCTGGGTAGCGTGGCTATAACAAAAGACGATGGACAATACAGAGGAAACAGAGAATGGTTTCACAGAAAGTCTCAAGGCAACCGGAGAGAGTTTTCTGAGGAGCAACTGCGCCAGGGTCAGAACCTGATTGGTTTACAGATGGGCAGTAACCGTGGGGCATCTCAATCTGGCATGACTGGTTATGGGATGCATCGGCAGATTATGTAAAGCTATACCAGTGCCCGGCAACCTGCCTAAAACACCTAGAAGACCTTAAACCCCCTCACACAGTCCTTTACCAAGCAGTGTTTCTTGATGGTGTGTCTATTTGATGAAGATATGATGAAACTGAAgttttaaagcgatagttcacccaaaaataaaacagttGGTAACCATCAGAATGTTTCAAACATTAATGAGTTACTTTTATTGAGCAGTTGGATGTTTgaaaccattaacttccatagtagaaaaaaaaatactatggaattcaatggttactgGTATGCAACATTCTTAAAAGTATCTCCTTTTGTggacaaaaggagaaaatcaaaGTCGATGGAGATTACACCATGACATTTGATATTTTGGGGGGgttgaactatcgctttaagaaGTTAAAGCATGCCAGATACAGTATGTTTAATATAAGTTGGGATTGCTAAGCTTGTGAGAAGaatcactttatttatttgtatatgtatgcagATAGTCATTATTAAAGATTTATCTAAGCAATCTGCCTTCTTTAAGAGCGAAGTGTGTGTTGATACACCAAATAACAGACCGCAGCTGTTTACTATAGTGTTTGAATGTACAGTAAAGGATGTGTACTGTTGTTATTGCTGGGTTTTAGCTAAATGGATGTCAATGCACATATTAGCAGGAAGTACTGTATGCAGATTAATAATAGTCATCAATAGTAAAgatatatttgtttgtgttgtccATCAGTGTTGTTGTGTGTTAACATTCCATGTGGGTTTCAATAAGCTTGGTTTTGGTGACCATGtttgaaaatgtttaataaattggtATCTTAAATTGAAAGATGTGTTGTTCTTTCTTATAAAATAGCGGTCTAAACTTCAAGTTCTTAACTTAAAGAATATATAGGACTTTATTTCAAGGTGTTACATGTTCTATGTACTTAcgattgaccttattctaaaatacgGAAGTGCGCTCAAGTTTGAGATTGTTTTAGAGCTTTAGATtaagttgcctatgggagaataGGAATAATAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4199 Predicted to be active in cytoskeleton. Is expressed in several structures, including nervous system; pigment cell; pronephric duct; tail bud; and trigeminal placode. Orthologous to several human genes including TAGLN3 (transgelin 3).

Ensembl:

ensembl_id ENSDART00000186061

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046337 lncRNA downstream 296756 21611602 ~ 21620256 (-) True XLOC_023424
TCONS_00046855 lncRNA downstream 547258 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046322 lncRNA downstream 547432 21368211 ~ 21369580 (-) True XLOC_023421
TCONS_00047176 lncRNA downstream 685841 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00047177 lncRNA upstream 132547 22053809 ~ 22066831 (-) True XLOC_023442
TCONS_00046366 lncRNA upstream 149959 22071221 ~ 22074272 (-) False XLOC_023443
TCONS_00046367 lncRNA upstream 149959 22071221 ~ 22077479 (-) False XLOC_023443
TCONS_00046370 lncRNA upstream 202624 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00046373 lncRNA upstream 769721 22690983 ~ 22701598 (-) False XLOC_023444
TCONS_00046348 mRNA downstream 2736 21905717 ~ 21914276 (-) False XLOC_023433
TCONS_00046349 mRNA downstream 3586 21906782 ~ 21913426 (-) True XLOC_023433
TCONS_00046346 mRNA downstream 13424 21863935 ~ 21903588 (-) False XLOC_023432
TCONS_00046347 mRNA downstream 13652 21864718 ~ 21903360 (-) True XLOC_023432
TCONS_00046345 mRNA downstream 69067 21841238 ~ 21847945 (-) True XLOC_023431
TCONS_00046353 mRNA upstream 2086 21923348 ~ 21934571 (-) True XLOC_023434
TCONS_00046354 mRNA upstream 17479 21938741 ~ 21952164 (-) True XLOC_023435
TCONS_00046356 mRNA upstream 38446 21959708 ~ 21973365 (-) False XLOC_023436
TCONS_00046355 mRNA upstream 38446 21959708 ~ 21973365 (-) False XLOC_023436
TCONS_00046359 mRNA upstream 42788 21964050 ~ 21973163 (-) True XLOC_023436
TCONS_00046316 other downstream 772712 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 1258344 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046286 other downstream 1385426 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 1445922 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 1729582 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046357 other upstream 41790 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046358 other upstream 42788 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046365 other upstream 149959 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 387682 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 450724 22371986 ~ 22372100 (-) True XLOC_023446